3HYD | pdb_00003hyd

LVEALYL peptide derived from human insulin chain B, residues 11-17


Experimental Data Snapshot

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.00 Å
  • R-Value Free:&nbsp
    0.180 (Depositor), 0.200 (DCC)&nbsp
  • R-Value Work:&nbsp
    0.146 (Depositor), 0.150 (DCC)&nbsp
  • R-Value Observed:&nbsp
    0.149&nbsp(Depositor)&nbsp

Starting Model: in silico
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wwPDB Validation&nbsp &nbsp3D Report&nbspFull Report


This is version 1.4 of the entry. See complete&nbsphistory.&nbsp


Literature

Molecular basis for insulin fibril assembly.

Ivanova, M.I.,&nbspSievers, S.A.,&nbspSawaya, M.R.,&nbspWall, J.S.,&nbspEisenberg, D.

(2009) Proc Natl Acad Sci U S A&nbsp106: 18990-18995

  • DOI:&nbsphttps://doi.org/10.1073/pnas.0910080106
  • Primary Citation of Related Structures: &nbsp
    3HYD

  • PubMed Abstract:&nbsp

    In the rare medical condition termed injection amyloidosis, extracellular fibrils of insulin are observed. We found that the segment of the insulin B-chain with sequence LVEALYL is the smallest segment that both nucleates and inhibits the fibrillation of full-length insulin in a molar ratio-dependent manner, suggesting that this segment is central to the cross-beta spine of the insulin fibril. In isolation from the rest of the protein, LVEALYL forms microcrystalline aggregates with fibrillar morphology, the structure of which we determined to 1 A resolution. The LVEALYL segments are stacked into pairs of tightly interdigitated beta-sheets, each pair displaying the dry steric zipper interface typical of amyloid-like fibrils. This structure leads to a model for fibrils of human insulin consistent with electron microscopic, x-ray fiber diffraction, and biochemical studies.


  • Organizational Affiliation:&nbsp

    Howard Hughes Medical Institute, UCLA-DOE Institute for Genomics and Proteomics, Los Angeles CA 90095-1570, USA.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Insulin7Homo sapiensMutation(s): 0&nbsp
Gene Names:&nbspINS
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP01308&nbsp(Homo sapiens)
Explore&nbspP01308&nbsp
Go to UniProtKB: &nbspP01308
PHAROS: &nbspP01308
GTEx: &nbspENSG00000254647&nbsp
Entity Groups &nbsp
UniProt GroupP01308
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.00 Å
  • R-Value Free:&nbsp 0.180 (Depositor), 0.200 (DCC)&nbsp
  • R-Value Work:&nbsp 0.146 (Depositor), 0.150 (DCC)&nbsp
  • R-Value Observed:&nbsp0.149&nbsp(Depositor)&nbsp
Space Group:&nbspC 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.478α = 90
b = 4.838β = 96.65
c = 19.442γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View&nbspFull Validation Report



Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-10-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description
  • Version 1.3: 2024-02-21
    Changes: Data collection, Database references
  • Version 1.4: 2024-04-03
    Changes: Refinement description