Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited
- PMID: 16415859
- DOI: 10.1038/nchembio759
Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited
Erratum in
- Nat Chem Biol. 2006 Mar;2(3):168
Abstract
Enzymes are biological catalysts vital to life processes and have attracted century-long investigation. The classic Michaelis-Menten mechanism provides a highly satisfactory description of catalytic activities for large ensembles of enzyme molecules. Here we tested the Michaelis-Menten equation at the single-molecule level. We monitored long time traces of enzymatic turnovers for individual beta-galactosidase molecules by detecting one fluorescent product at a time. A molecular memory phenomenon arises at high substrate concentrations, characterized by clusters of turnover events separated by periods of low activity. Such memory lasts for decades of timescales ranging from milliseconds to seconds owing to the presence of interconverting conformers with broadly distributed lifetimes. We proved that the Michaelis-Menten equation still holds even for a fluctuating single enzyme, but bears a different microscopic interpretation.
Comment in
-
Michaelis-Menten is dead, long live Michaelis-Menten!Nat Chem Biol. 2006 Feb;2(2):66-7. doi: 10.1038/nchembio0206-66. Nat Chem Biol. 2006. PMID: 16421583 No abstract available.
Similar articles
-
Single-molecule Michaelis-Menten equations.J Phys Chem B. 2005 Oct 20;109(41):19068-81. doi: 10.1021/jp051490q. J Phys Chem B. 2005. PMID: 16853459
-
Dynamic disorder in single-molecule Michaelis-Menten kinetics: the reaction-diffusion formalism in the Wilemski-Fixman approximation.J Chem Phys. 2007 Sep 14;127(10):105103. doi: 10.1063/1.2768059. J Chem Phys. 2007. PMID: 17867782
-
Fast mixing and reaction initiation control of single-enzyme kinetics in confined volumes.Langmuir. 2008 May 6;24(9):4439-42. doi: 10.1021/la800053e. Epub 2008 Mar 25. Langmuir. 2008. PMID: 18361535
-
Fluctuating enzymes: lessons from single-molecule studies.Acc Chem Res. 2005 Dec;38(12):923-31. doi: 10.1021/ar040133f. Acc Chem Res. 2005. PMID: 16359164 Review.
-
A note on the kinetics of enzyme action: a decomposition that highlights thermodynamic effects.FEBS Lett. 2013 Sep 2;587(17):2772-7. doi: 10.1016/j.febslet.2013.07.028. Epub 2013 Jul 23. FEBS Lett. 2013. PMID: 23892083 Review.
Cited by
-
Analysis of kinetic intermediates in single-particle dwell-time distributions.Biophys J. 2010 Jul 21;99(2):360-6. doi: 10.1016/j.bpj.2010.04.049. Biophys J. 2010. PMID: 20643053 Free PMC article.
-
A new view of protein synthesis: mapping the free energy landscape of the ribosome using single-molecule FRET.Biopolymers. 2008 Jul;89(7):565-77. doi: 10.1002/bip.20961. Biopolymers. 2008. PMID: 18286627 Free PMC article. Review.
-
Slow diffusion underlies alternation of fast and slow growth periods of microtubule assembly.ScientificWorldJournal. 2014 Jan 30;2014:601898. doi: 10.1155/2014/601898. eCollection 2014. ScientificWorldJournal. 2014. PMID: 24605057 Free PMC article.
-
Single-molecule enzymatic conformational dynamics: spilling out the product molecules.J Phys Chem B. 2014 Aug 7;118(31):9128-40. doi: 10.1021/jp5014434. Epub 2014 Jul 28. J Phys Chem B. 2014. PMID: 25025461 Free PMC article.
-
Rate theories for biologists.Q Rev Biophys. 2010 May;43(2):219-93. doi: 10.1017/S0033583510000120. Epub 2010 Aug 9. Q Rev Biophys. 2010. PMID: 20691138 Free PMC article. Review.
Publication types
MeSH terms
Substances
Associated data
LinkOut - more resources
Full Text Sources
Other Literature Sources