Swiveling-domain mechanism for enzymatic phosphotransfer between remote reaction sites
- PMID: 8610096
- PMCID: PMC39685
- DOI: 10.1073/pnas.93.7.2652
Swiveling-domain mechanism for enzymatic phosphotransfer between remote reaction sites
Abstract
The crystal structure of pyruvate phosphate dikinase, a histidyl multiphosphotransfer enzyme that synthesizes adenosine triphosphate, reveals a three-domain molecule in which the phosphohistidine domain is flanked by the nucleotide and the phosphoenolpyruvate/pyruvate domains, with the two substrate binding sites approximately 45 angstroms apart. The modes of substrate binding have been deduced by analogy to D-Ala-D-Ala ligase and to pyruvate kinase. Coupling between the two remote active sites is facilitated by two conformational states of the phosphohistidine domain. While the crystal structure represents the state of interaction with the nucleotide, the second state is achieved by swiveling around two flexible peptide linkers. This dramatic conformational transition brings the phosphocarrier residue in close proximity to phosphoenolpyruvate/pyruvate. The swiveling-domain paradigm provides an effective mechanism for communication in complex multidomain/multiactive site proteins.
Similar articles
-
Swiveling domain mechanism in pyruvate phosphate dikinase.Biochemistry. 2007 Dec 25;46(51):14845-53. doi: 10.1021/bi701848w. Epub 2007 Dec 4. Biochemistry. 2007. PMID: 18052212
-
Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion.Biochemistry. 2005 Feb 1;44(4):1136-44. doi: 10.1021/bi0484522. Biochemistry. 2005. PMID: 15667207
-
Pyruvate site of pyruvate phosphate dikinase: crystal structure of the enzyme-phosphonopyruvate complex, and mutant analysis.Biochemistry. 2002 Jan 22;41(3):780-7. doi: 10.1021/bi011799+. Biochemistry. 2002. PMID: 11790099
-
Investigation of the catalytic site within the ATP-grasp domain of Clostridium symbiosum pyruvate phosphate dikinase.J Biol Chem. 2001 Oct 5;276(40):37630-9. doi: 10.1074/jbc.M105631200. Epub 2001 Jul 23. J Biol Chem. 2001. PMID: 11468288
-
Investigation of the role of the domain linkers in separate site catalysis by Clostridium symbiosum pyruvate phosphate dikinase.Biochemistry. 2001 Nov 13;40(45):13466-73. doi: 10.1021/bi0113061. Biochemistry. 2001. PMID: 11695893
Cited by
-
Detecting coevolution in and among protein domains.PLoS Comput Biol. 2007 Nov;3(11):e211. doi: 10.1371/journal.pcbi.0030211. Epub 2007 Sep 18. PLoS Comput Biol. 2007. PMID: 17983264 Free PMC article.
-
How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria.Microbiol Mol Biol Rev. 2006 Dec;70(4):939-1031. doi: 10.1128/MMBR.00024-06. Microbiol Mol Biol Rev. 2006. PMID: 17158705 Free PMC article. Review.
-
Structural and kinetic characterization of 4-hydroxy-4-methyl-2-oxoglutarate/4-carboxy-4-hydroxy-2-oxoadipate aldolase, a protocatechuate degradation enzyme evolutionarily convergent with the HpaI and DmpG pyruvate aldolases.J Biol Chem. 2010 Nov 19;285(47):36608-15. doi: 10.1074/jbc.M110.159509. Epub 2010 Sep 15. J Biol Chem. 2010. PMID: 20843800 Free PMC article.
-
The Replicative DnaE Polymerase of Bacillus subtilis Recruits the Glycolytic Pyruvate Kinase (PykA) When Bound to Primed DNA Templates.Life (Basel). 2023 Apr 7;13(4):965. doi: 10.3390/life13040965. Life (Basel). 2023. PMID: 37109494 Free PMC article.
-
Efficient In Vivo Screening Method for the Identification of C4 Photosynthesis Inhibitors Based on Cell Suspensions of the Single-Cell C4 Plant Bienertia sinuspersici.Front Plant Sci. 2019 Oct 30;10:1350. doi: 10.3389/fpls.2019.01350. eCollection 2019. Front Plant Sci. 2019. PMID: 31736996 Free PMC article.
References
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Molecular Biology Databases