2VK0 | pdb_00002vk0

Crystal structure form ultalente insulin microcrystals


Experimental Data Snapshot

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp2.20 Å
  • R-Value Free:&nbsp
    0.282 (Depositor), 0.290 (DCC)&nbsp
  • R-Value Work:&nbsp
    0.240 (Depositor), 0.240 (DCC)&nbsp
  • R-Value Observed:&nbsp
    0.242&nbsp(Depositor)&nbsp

Starting Model: experimental
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This is version 1.4 of the entry. See complete&nbsphistory.&nbsp


Literature

Crystal Structure of Ultralente--A Microcrystalline Insulin Suspension.

Wagner, A.,&nbspDiez, J.,&nbspSchulze-Briese, C.,&nbspSchluckebier, G.

(2009) Proteins&nbsp74: 1018

  • DOI:&nbsphttps://doi.org/10.1002/prot.22213
  • Primary Citation of Related Structures: &nbsp
    2VJZ, 2VK0

  • PubMed Abstract:&nbsp

    Ultralente insulin has been one of the commercially most important insulin preparations in diabetes treatment over the last 50 years. It is a suspension of insulin microcrystals which dissolve slowly following subcutaneous injection. Because of the small crystal size of about 25 x 25 x 5 microm(3) the atomic structure has been elusive until now. Here we present the crystal structures from Ultralente and their precursor microcrystals from the industrial manufacturing process. During this process insulin undergoes a conformational change within the microcrystals. Both structures show canonical folding of the insulin molecules but exhibit a number of new features when compared with other insulin structures. Surprisingly, we found that the Ultralente crystals bind the conservation agent methylparaben, which slows down dissolution of the crystals and thus contributes to the long duration of action.


  • Organizational Affiliation:&nbsp

    Swiss Light Source, Paul Scherrer Institute, CH-5323 Villigen PSI, Switzerland. [email protected]


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
INSULIN A CHAIN
A, C
21Homo sapiensMutation(s): 0&nbsp
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP01308&nbsp(Homo sapiens)
Explore&nbspP01308&nbsp
Go to UniProtKB: &nbspP01308
PHAROS: &nbspP01308
GTEx: &nbspENSG00000254647&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01308
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
INSULIN B CHAIN
B, D
30Homo sapiensMutation(s): 0&nbsp
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP01308&nbsp(Homo sapiens)
Explore&nbspP01308&nbsp
Go to UniProtKB: &nbspP01308
PHAROS: &nbspP01308
GTEx: &nbspENSG00000254647&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01308
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp2.20 Å
  • R-Value Free:&nbsp 0.282 (Depositor), 0.290 (DCC)&nbsp
  • R-Value Work:&nbsp 0.240 (Depositor), 0.240 (DCC)&nbsp
  • R-Value Observed:&nbsp0.242&nbsp(Depositor)&nbsp
Space Group:&nbspH 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.03α = 90
b = 81.03β = 90
c = 33.9γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
AMoREphasing

Structure Validation

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Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-09-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2011-08-03
    Changes: Database references, Derived calculations, Other
  • Version 1.3: 2024-05-01
    Changes: Data collection, Database references, Derived calculations, Other, Refinement description
  • Version 1.4: 2024-10-16
    Changes: Structure summary