Description
Describe the bug 🐞
When calling componentwise_vectors_timepoint
on an Ensemble Solution of an ODEProblem, if the timepoints provided are given as a SVector, it raises a LoadError due to attempting to use setindex!
on the SVector.
Expected behavior
componentwise_vectors_timepoint
should return the interpolated solution, as an SVector. Note that this is the behavior that occurs if the Ensemble is from an SDEProblem.
Minimal Reproducible Example 👇
using StaticArrays
using DifferentialEquations
using DifferentialEquations.EnsembleAnalysis
SDEprob = SDEProblem((u, p, t) -> 1.01u, (u, p, t) -> 1.01u, 0.5, (0.0, 1.0))
SDEensemble_prob = EnsembleProblem(SDEprob)
prob = ODEProblem((u, p, t) -> 1.01u, 0.5, (0.0, 1.0))
ensemble_prob = EnsembleProblem(prob)
SDEysim = solve(SDEensemble_prob, SOSRI(), trajectories = 1)
ysim = solve(ensemble_prob, Tsit5(), trajectories = 1)
t = SVector{11}(0:0.1:1) # t values we want to interpolate to, converted to SVector
componentwise_vectors_timepoint(SDEysim, t)[1] # Returns the interpolated u as an SVector
componentwise_vectors_timepoint(ysim, t)[1] # MethodError due to using setindex! on t
Error & Stacktrace
The SDE timepoint interpolation returns the following:
t: 11-element SVector{11, Float64} with indices SOneTo(11):
0.0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0.9
1.0
u: 11-element SVector{11, Float64} with indices SOneTo(11):
0.5
0.5546109594698383
0.8321574072368957
0.6965533677964221
0.6559293124311955
0.4941314584280177
0.4658099736486656
0.32344010904393883
0.28964405720750147
0.31472125794773376
0.2209161971944798
The error that results from the ODE interpolation is the following:
ERROR: LoadError: setindex!(::SVector{11, Float64}, value, ::Int) is not defined.
Hint: Use `MArray` or `SizedArray` to create a mutable static array
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] setindex!(a::SVector{11, Float64}, value::Float64, i::Int64)
@ StaticArrays ~/.julia/packages/StaticArrays/9Yt0H/src/indexing.jl:3
[3] macro expansion
@ ~/.julia/packages/StaticArrays/9Yt0H/src/indexing.jl:199 [inlined]
[4] _setindex!
@ ~/.julia/packages/StaticArrays/9Yt0H/src/indexing.jl:192 [inlined]
[5] setindex!
@ ~/.julia/packages/StaticArrays/9Yt0H/src/indexing.jl:167 [inlined]
[6] invpermute!(v::SVector{11, Float64}, p::SVector{11, Int64})
@ Base ./combinatorics.jl:237
[7] ode_interpolation(tvals::SVector{…}, id::OrdinaryDiffEqCore.InterpolationData{…}, idxs::Nothing, deriv::Type{…}, p::SciMLBase.NullParameters, continuity::Symbol)
@ OrdinaryDiffEqCore ~/.julia/packages/OrdinaryDiffEqCore/NnA60/src/dense/generic_dense.jl:574
[8] (::OrdinaryDiffEqCore.InterpolationData{…})(tvals::SVector{…}, idxs::Nothing, deriv::Type, p::SciMLBase.NullParameters, continuity::Symbol)
@ OrdinaryDiffEqCore ~/.julia/packages/OrdinaryDiffEqCore/NnA60/src/interp_func.jl:46
[9] (::ODESolution{…})(t::SVector{…}, ::Type{…}, idxs::Nothing, continuity::Symbol)
@ SciMLBase ~/.julia/packages/SciMLBase/fqdZV/src/solutions/ode_solutions.jl:242
[10] (::ODESolution{…})(t::SVector{…}, ::Type{…}; idxs::Nothing, continuity::Symbol)
@ SciMLBase ~/.julia/packages/SciMLBase/fqdZV/src/solutions/ode_solutions.jl:224
[11] (::ODESolution{Float64, 1, Vector{…}, Nothing, Nothing, Vector{…}, Vector{…}, Nothing, ODEProblem{…}, Tsit5{…}, OrdinaryDiffEqCore.InterpolationData{…}, SciMLBase.DEStats, Nothing, Nothing, Nothing, Nothing})(t::SVector{11, Float64}, ::Type{Val{…}})
@ SciMLBase ~/.julia/packages/SciMLBase/fqdZV/src/solutions/ode_solutions.jl:219
[12] (::SciMLBase.EnsembleAnalysis.var"#3#4"{…})(sol::ODESolution{…})
@ SciMLBase.EnsembleAnalysis ./none:0
[13] iterate
@ ./generator.jl:48 [inlined]
[14] componentwise_vectors_timepoint(sim::EnsembleSolution{Float64, 2, Vector{ODESolution{…}}}, t::SVector{11, Float64})
@ SciMLBase.EnsembleAnalysis ~/.julia/packages/SciMLBase/fqdZV/src/ensemble/ensemble_analysis.jl:17
[15] top-level scope
@ ./toyensemble.jl:18
[16] include(fname::String)
@ Main ./sysimg.jl:38
[17] top-level scope
@ REPL[3]:1
in expression starting at ./toyensemble.jl:18
Some type information was truncated. Use `show(err)` to see complete types.
Environment (please complete the following information):
I ran this code in a temporary environment on julia 1.11.1.
- Output of
using Pkg; Pkg.status()
Status `/tmp/jl_Nz9Lu1/Project.toml`
[0c46a032] DifferentialEquations v7.14.0
[90137ffa] StaticArrays v1.9.8
- Output of
using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
Status `/tmp/jl_Nz9Lu1/Manifest.toml`
[47edcb42] ADTypes v1.9.0
[1520ce14] AbstractTrees v0.4.5
[7d9f7c33] Accessors v0.1.38
[79e6a3ab] Adapt v4.1.0
[66dad0bd] AliasTables v1.1.3
[ec485272] ArnoldiMethod v0.4.0
[4fba245c] ArrayInterface v7.16.0
[4c555306] ArrayLayouts v1.10.4
[aae01518] BandedMatrices v1.7.5
[e2ed5e7c] Bijections v0.1.9
[62783981] BitTwiddlingConvenienceFunctions v0.1.6
[764a87c0] BoundaryValueDiffEq v5.11.0
[fa961155] CEnum v0.5.0
[2a0fbf3d] CPUSummary v0.2.6
[d360d2e6] ChainRulesCore v1.25.0
[fb6a15b2] CloseOpenIntervals v0.1.13
[861a8166] Combinatorics v1.0.2
[38540f10] CommonSolve v0.2.4
[bbf7d656] CommonSubexpressions v0.3.1
[f70d9fcc] CommonWorldInvalidations v1.0.0
[34da2185] Compat v4.16.0
[b152e2b5] CompositeTypes v0.1.4
[a33af91c] CompositionsBase v0.1.2
[2569d6c7] ConcreteStructs v0.2.3
[187b0558] ConstructionBase v1.5.8
[adafc99b] CpuId v0.3.1
[9a962f9c] DataAPI v1.16.0
[864edb3b] DataStructures v0.18.20
[e2d170a0] DataValueInterfaces v1.0.0
[bcd4f6db] DelayDiffEq v5.48.1
[2b5f629d] DiffEqBase v6.158.3
⌅ [459566f4] DiffEqCallbacks v3.9.1
[77a26b50] DiffEqNoiseProcess v5.23.0
[163ba53b] DiffResults v1.1.0
[b552c78f] DiffRules v1.15.1
[0c46a032] DifferentialEquations v7.14.0
[a0c0ee7d] DifferentiationInterface v0.6.16
[b4f34e82] Distances v0.10.12
[31c24e10] Distributions v0.25.112
[ffbed154] DocStringExtensions v0.9.3
[5b8099bc] DomainSets v0.7.14
[7c1d4256] DynamicPolynomials v0.6.0
[4e289a0a] EnumX v1.0.4
[f151be2c] EnzymeCore v0.8.4
[d4d017d3] ExponentialUtilities v1.26.1
[e2ba6199] ExprTools v0.1.10
⌅ [6b7a57c9] Expronicon v0.8.5
[9d29842c] FastAlmostBandedMatrices v0.1.4
[7034ab61] FastBroadcast v0.3.5
[9aa1b823] FastClosures v0.3.2
[29a986be] FastLapackInterface v2.0.4
[a4df4552] FastPower v1.1.0
[1a297f60] FillArrays v1.13.0
[6a86dc24] FiniteDiff v2.26.0
[1fa38f19] Format v1.3.7
[f6369f11] ForwardDiff v0.10.36
[069b7b12] FunctionWrappers v1.1.3
[77dc65aa] FunctionWrappersWrappers v0.1.3
[d9f16b24] Functors v0.4.12
⌅ [46192b85] GPUArraysCore v0.1.6
[14197337] GenericLinearAlgebra v0.3.13
[c145ed77] GenericSchur v0.5.4
[86223c79] Graphs v1.12.0
[3e5b6fbb] HostCPUFeatures v0.1.17
[34004b35] HypergeometricFunctions v0.3.24
[615f187c] IfElse v0.1.1
[d25df0c9] Inflate v0.1.5
[18e54dd8] IntegerMathUtils v0.1.2
[8197267c] IntervalSets v0.7.10
[3587e190] InverseFunctions v0.1.17
[92d709cd] IrrationalConstants v0.2.2
[82899510] IteratorInterfaceExtensions v1.0.0
[692b3bcd] JLLWrappers v1.6.1
[ccbc3e58] JumpProcesses v9.14.0
[ef3ab10e] KLU v0.6.0
[ba0b0d4f] Krylov v0.9.8
[b964fa9f] LaTeXStrings v1.4.0
[23fbe1c1] Latexify v0.16.5
[10f19ff3] LayoutPointers v0.1.17
[5078a376] LazyArrays v2.2.1
[2d8b4e74] LevyArea v1.0.0
[87fe0de2] LineSearch v0.1.4
[d3d80556] LineSearches v7.3.0
[7ed4a6bd] LinearSolve v2.36.1
[2ab3a3ac] LogExpFunctions v0.3.28
[bdcacae8] LoopVectorization v0.12.171
[d8e11817] MLStyle v0.4.17
[1914dd2f] MacroTools v0.5.13
[d125e4d3] ManualMemory v0.1.8
[a3b82374] MatrixFactorizations v3.0.1
[bb5d69b7] MaybeInplace v0.1.4
[e1d29d7a] Missings v1.2.0
[46d2c3a1] MuladdMacro v0.2.4
[102ac46a] MultivariatePolynomials v0.5.7
[d8a4904e] MutableArithmetics v1.5.2
[d41bc354] NLSolversBase v7.8.3
[2774e3e8] NLsolve v4.5.1
[77ba4419] NaNMath v1.0.2
[8913a72c] NonlinearSolve v3.15.1
[6fe1bfb0] OffsetArrays v1.14.1
[429524aa] Optim v1.9.4
[bac558e1] OrderedCollections v1.6.3
[1dea7af3] OrdinaryDiffEq v6.89.0
[89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.1.0
[6ad6398a] OrdinaryDiffEqBDF v1.1.2
[bbf590c4] OrdinaryDiffEqCore v1.9.0
[50262376] OrdinaryDiffEqDefault v1.1.0
[4302a76b] OrdinaryDiffEqDifferentiation v1.1.0
[9286f039] OrdinaryDiffEqExplicitRK v1.1.0
[e0540318] OrdinaryDiffEqExponentialRK v1.1.0
[becaefa8] OrdinaryDiffEqExtrapolation v1.2.0
[5960d6e9] OrdinaryDiffEqFIRK v1.2.0
[101fe9f7] OrdinaryDiffEqFeagin v1.1.0
[d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1
[d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0
[9f002381] OrdinaryDiffEqIMEXMultistep v1.1.0
[521117fe] OrdinaryDiffEqLinear v1.1.0
[1344f307] OrdinaryDiffEqLowOrderRK v1.2.0
[b0944070] OrdinaryDiffEqLowStorageRK v1.2.1
[127b3ac7] OrdinaryDiffEqNonlinearSolve v1.2.1
[c9986a66] OrdinaryDiffEqNordsieck v1.1.0
[5dd0a6cf] OrdinaryDiffEqPDIRK v1.1.0
[5b33eab2] OrdinaryDiffEqPRK v1.1.0
[04162be5] OrdinaryDiffEqQPRK v1.1.0
[af6ede74] OrdinaryDiffEqRKN v1.1.0
[43230ef6] OrdinaryDiffEqRosenbrock v1.2.0
[2d112036] OrdinaryDiffEqSDIRK v1.1.0
[669c94d9] OrdinaryDiffEqSSPRK v1.2.0
[e3e12d00] OrdinaryDiffEqStabilizedIRK v1.1.0
[358294b1] OrdinaryDiffEqStabilizedRK v1.1.0
[fa646aed] OrdinaryDiffEqSymplecticRK v1.1.0
[b1df2697] OrdinaryDiffEqTsit5 v1.1.0
[79d7bb75] OrdinaryDiffEqVerner v1.1.1
[90014a1f] PDMats v0.11.31
[65ce6f38] PackageExtensionCompat v1.0.2
[d96e819e] Parameters v0.12.3
[e409e4f3] PoissonRandom v0.4.4
[f517fe37] Polyester v0.7.16
[1d0040c9] PolyesterWeave v0.2.2
[f27b6e38] Polynomials v4.0.11
[85a6dd25] PositiveFactorizations v0.2.4
[d236fae5] PreallocationTools v0.4.24
[aea7be01] PrecompileTools v1.2.1
[21216c6a] Preferences v1.4.3
[27ebfcd6] Primes v0.5.6
[43287f4e] PtrArrays v1.2.1
[1fd47b50] QuadGK v2.11.1
[74087812] Random123 v1.7.0
[e6cf234a] RandomNumbers v1.6.0
[3cdcf5f2] RecipesBase v1.3.4
[731186ca] RecursiveArrayTools v3.27.0
[f2c3362d] RecursiveFactorization v0.2.23
[189a3867] Reexport v1.2.2
[ae029012] Requires v1.3.0
[ae5879a3] ResettableStacks v1.1.1
[79098fc4] Rmath v0.8.0
[47965b36] RootedTrees v2.23.1
[7e49a35a] RuntimeGeneratedFunctions v0.5.13
[94e857df] SIMDTypes v0.1.0
[476501e8] SLEEFPirates v0.6.43
[0bca4576] SciMLBase v2.57.1
[19f34311] SciMLJacobianOperators v0.1.0
[c0aeaf25] SciMLOperators v0.3.11
[53ae85a6] SciMLStructures v1.5.0
[efcf1570] Setfield v1.1.1
[727e6d20] SimpleNonlinearSolve v1.12.3
[699a6c99] SimpleTraits v0.9.4
[ce78b400] SimpleUnPack v1.1.0
[a2af1166] SortingAlgorithms v1.2.1
[9f842d2f] SparseConnectivityTracer v0.6.8
[47a9eef4] SparseDiffTools v2.23.0
[0a514795] SparseMatrixColorings v0.4.8
[e56a9233] Sparspak v0.3.9
[276daf66] SpecialFunctions v2.4.0
[aedffcd0] Static v1.1.1
[0d7ed370] StaticArrayInterface v1.8.0
[90137ffa] StaticArrays v1.9.8
[1e83bf80] StaticArraysCore v1.4.3
[10745b16] Statistics v1.11.1
[82ae8749] StatsAPI v1.7.0
[2913bbd2] StatsBase v0.34.3
[4c63d2b9] StatsFuns v1.3.2
[9672c7b4] SteadyStateDiffEq v2.4.1
[789caeaf] StochasticDiffEq v6.70.0
[7792a7ef] StrideArraysCore v0.5.7
[c3572dad] Sundials v4.26.0
[2efcf032] SymbolicIndexingInterface v0.3.33
[19f23fe9] SymbolicLimits v0.2.2
[d1185830] SymbolicUtils v3.7.2
[0c5d862f] Symbolics v6.16.0
[3783bdb8] TableTraits v1.0.1
[bd369af6] Tables v1.12.0
[8ea1fca8] TermInterface v2.0.0
[8290d209] ThreadingUtilities v0.5.2
[a759f4b9] TimerOutputs v0.5.25
[d5829a12] TriangularSolve v0.2.1
[781d530d] TruncatedStacktraces v1.4.0
[3a884ed6] UnPack v1.0.2
[a7c27f48] Unityper v0.1.6
[3d5dd08c] VectorizationBase v0.21.70
[19fa3120] VertexSafeGraphs v0.2.0
[1d5cc7b8] IntelOpenMP_jll v2024.2.1+0
[856f044c] MKL_jll v2024.2.0+0
[efe28fd5] OpenSpecFun_jll v0.5.5+0
[f50d1b31] Rmath_jll v0.5.1+0
⌅ [fb77eaff] Sundials_jll v5.2.3+0
[1317d2d5] oneTBB_jll v2021.12.0+0
[0dad84c5] ArgTools v1.1.2
[56f22d72] Artifacts v1.11.0
[2a0f44e3] Base64 v1.11.0
[ade2ca70] Dates v1.11.0
[8ba89e20] Distributed v1.11.0
[f43a241f] Downloads v1.6.0
[7b1f6079] FileWatching v1.11.0
[9fa8497b] Future v1.11.0
[b77e0a4c] InteractiveUtils v1.11.0
[4af54fe1] LazyArtifacts v1.11.0
[b27032c2] LibCURL v0.6.4
[76f85450] LibGit2 v1.11.0
[8f399da3] Libdl v1.11.0
[37e2e46d] LinearAlgebra v1.11.0
[56ddb016] Logging v1.11.0
[d6f4376e] Markdown v1.11.0
[a63ad114] Mmap v1.11.0
[ca575930] NetworkOptions v1.2.0
[44cfe95a] Pkg v1.11.0
[de0858da] Printf v1.11.0
[9a3f8284] Random v1.11.0
[ea8e919c] SHA v0.7.0
[9e88b42a] Serialization v1.11.0
[1a1011a3] SharedArrays v1.11.0
[6462fe0b] Sockets v1.11.0
[2f01184e] SparseArrays v1.11.0
[4607b0f0] SuiteSparse
[fa267f1f] TOML v1.0.3
[a4e569a6] Tar v1.10.0
[8dfed614] Test v1.11.0
[cf7118a7] UUIDs v1.11.0
[4ec0a83e] Unicode v1.11.0
[e66e0078] CompilerSupportLibraries_jll v1.1.1+0
[deac9b47] LibCURL_jll v8.6.0+0
[e37daf67] LibGit2_jll v1.7.2+0
[29816b5a] LibSSH2_jll v1.11.0+1
[c8ffd9c3] MbedTLS_jll v2.28.6+0
[14a3606d] MozillaCACerts_jll v2023.12.12
[4536629a] OpenBLAS_jll v0.3.27+1
[05823500] OpenLibm_jll v0.8.1+2
[bea87d4a] SuiteSparse_jll v7.7.0+0
[83775a58] Zlib_jll v1.2.13+1
[8e850b90] libblastrampoline_jll v5.11.0+0
[8e850ede] nghttp2_jll v1.59.0+0
[3f19e933] p7zip_jll v17.4.0+2
Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
- Output of
versioninfo()
Julia Version 1.11.1
Commit 8f5b7ca12ad (2024-10-16 10:53 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: 16 × AMD Ryzen 7 5700X3D 8-Core Processor
WORD_SIZE: 64
LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 16 virtual cores)
Additional context
I originally posted about this issue here, but the context isn't particularly important.