Genome Biology

Identifying associations of de novo noncoding variants with autism through integration of gene expression, sequence, and sex information

Authors: Runjia Li and Jason Ernst

Content type: Research 4 June 2025
DNA G-quadruplex structures act as functional elements in α- and β-globin enhancers

Authors: Colm Doyle, Krzysztof Herka, Sean M. Flynn, Larry Melidis, Somdutta Dhir, Stefan Schoenfelder, David Tannahill and Shankar Balasubramanian

Content type: Research 4 June 2025
Transcriptional analysis of metastatic hormone-naïve prostate cancer primary tumor biopsies reveals a relevant role for SOX11 in prostate cancer cell dissemination

Authors: Natalia Martin-Martin, Saioa Garcia-Longarte, Jon Corres-Mendizabal, Uxue Lazcano, Ianire Astobiza, Laura Bozal-Basterra, Nicolas Herranz, Hielke van Splunder, Onintza Carlevaris, Mikel Pujana-Vaquerizo, María Teresa Blasco, Ana M. Aransay, Antonio Rosino, Julian Tudela, Daniel Jimenez, Alberto Martinez…

Content type: Research 3 June 2025
DeepGFT: identifying spatial domains in spatial transcriptomics of complex and 3D tissue using deep learning and graph Fourier transform

Authors: Shuli Sun, Jixin Liu, Guojun Li and Bingqiang Liu

Content type: Methodology 3 June 2025
A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics

Authors: Mengnan Shi, Loren Méar, Max Karlsson, María Bueno Álvez, Andreas Digre, Rutger Schutten, Borbala Katona, Jimmy Vuu, Emil Lindström, Feria Hikmet, Han Jin, Meng Yuan, Xiangyu Li, Hong Yang, Xiya Song, Evelina Sjöstedt…

Content type: Database 3 June 2025

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A survey of best practices for RNA-seq data analysis

Authors: Ana Conesa, Pedro Madrigal, Sonia Tarazona, David Gomez-Cabrero, Alejandra Cervera, Andrew McPherson, Michał Wojciech Szcześniak, Daniel J. Gaffney, Laura L. Elo, Xuegong Zhang and Ali Mortazavi

Content type: Review 26 January 2016

The Erratum to this article has been published in Genome Biology 2016 17:181
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Authors: Michael I Love, Wolfgang Huber and Simon Anders

Content type: METHOD 5 December 2014
The Kardashian index: a measure of discrepant social media profile for scientists

Authors: Neil Hall

Content type: Comment 30 July 2014
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Authors: Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe and Frank Speleman

Content type: Research 18 June 2002
Differential expression analysis for sequence count data

Authors: Simon Anders and Wolfgang Huber

Content type: Method 27 October 2010

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Identifying associations of de novo noncoding variants with autism through integration of gene expression, sequence, and sex information

DNA G-quadruplex structures act as functional elements in α- and β-globin enhancers

Transcriptional analysis of metastatic hormone-naïve prostate cancer primary tumor biopsies reveals a relevant role for SOX11 in prostate cancer cell dissemination

DeepGFT: identifying spatial domains in spatial transcriptomics of complex and 3D tissue using deep learning and graph Fourier transform

A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics

A survey of best practices for RNA-seq data analysis

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

The Kardashian index: a measure of discrepant social media profile for scientists

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Differential expression analysis for sequence count data

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PhenoDP: leveraging deep learning for phenotype-based case reporting, disease ranking, and symptom recommendation

The molecular impact of cigarette smoking resembles aging across tissues

Associations between HLA-II variation and antibody specificity are predicted by antigen properties

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