Spike train metrics
- PMID: 16140522
- PMCID: PMC2713191
- DOI: 10.1016/j.conb.2005.08.002
Spike train metrics
Abstract
Quantifying similarity and dissimilarity of spike trains is an important requisite for understanding neural codes. Spike metrics constitute a class of approaches to this problem. In contrast to most signal-processing methods, spike metrics operate on time series of all-or-none events, and are, thus, particularly appropriate for extracellularly recorded neural signals. The spike metric approach can be extended to multineuronal recordings, mitigating the 'curse of dimensionality' typically associated with analyses of multivariate data. Spike metrics have been usefully applied to the analysis of neural coding in a variety of systems, including vision, audition, olfaction, taste and electric sense.
Figures

Similar articles
-
Dynamic programming algorithms for comparing multineuronal spike trains via cost-based metrics and alignments.J Neurosci Methods. 2007 Apr 15;161(2):351-60. doi: 10.1016/j.jneumeth.2006.11.001. Epub 2006 Dec 15. J Neurosci Methods. 2007. PMID: 17174403 Free PMC article.
-
A new multineuron spike train metric.Neural Comput. 2008 Jun;20(6):1495-511. doi: 10.1162/neco.2007.10-06-350. Neural Comput. 2008. PMID: 18194108 Free PMC article.
-
Neural decoding with kernel-based metric learning.Neural Comput. 2014 Jun;26(6):1080-107. doi: 10.1162/NECO_a_00591. Epub 2014 Mar 31. Neural Comput. 2014. PMID: 24684447
-
An overview of Bayesian methods for neural spike train analysis.Comput Intell Neurosci. 2013;2013:251905. doi: 10.1155/2013/251905. Epub 2013 Nov 17. Comput Intell Neurosci. 2013. PMID: 24348527 Free PMC article. Review.
-
Towards reliable spike-train recordings from thousands of neurons with multielectrodes.Curr Opin Neurobiol. 2012 Feb;22(1):11-7. doi: 10.1016/j.conb.2011.10.001. Epub 2011 Oct 22. Curr Opin Neurobiol. 2012. PMID: 22023727 Free PMC article. Review.
Cited by
-
A novel, jitter-based method for detecting and measuring spike synchrony and quantifying temporal firing precision.Neural Syst Circuits. 2012 May 2;2(1):5. doi: 10.1186/2042-1001-2-5. Neural Syst Circuits. 2012. PMID: 22551243 Free PMC article.
-
Odor-taste convergence in the nucleus of the solitary tract of the awake freely licking rat.J Neurosci. 2015 Apr 22;35(16):6284-97. doi: 10.1523/JNEUROSCI.3526-14.2015. J Neurosci. 2015. PMID: 25904782 Free PMC article.
-
Cell groups reveal structure of stimulus space.PLoS Comput Biol. 2008 Oct;4(10):e1000205. doi: 10.1371/journal.pcbi.1000205. Epub 2008 Oct 31. PLoS Comput Biol. 2008. PMID: 18974826 Free PMC article.
-
Spike burst-pause dynamics of Purkinje cells regulate sensorimotor adaptation.PLoS Comput Biol. 2019 Mar 12;15(3):e1006298. doi: 10.1371/journal.pcbi.1006298. eCollection 2019 Mar. PLoS Comput Biol. 2019. PMID: 30860991 Free PMC article.
-
Effects of dopamine on response properties of ON-OFF RGCs in encoding stimulus durations.Front Neural Circuits. 2014 Jun 30;8:72. doi: 10.3389/fncir.2014.00072. eCollection 2014. Front Neural Circuits. 2014. PMID: 25071453 Free PMC article.
References
-
- Slepian D. On bandwidth. Proc IEEE. 1976;64:292–300.
-
- Segundo JP, Perkel DH. The nerve cell as an analyzer of spike trains. In: Brazier MAB, editor. The Interneuron. University of California Press; 1969. pp. 349–390. - PubMed
-
- Abbott LF. Integrating with action potentials. Neuron. 2000;26:3–4. - PubMed
-
- Kennel MB, Mees AI. Context-tree modeling of observed symbolic dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2002;66 056209. - PubMed
Publication types
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources