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[MRG + 1] Make it possible to run doctests in .rst files with pytest #9697

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lesteve commented Sep 6, 2017 •
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Fix #9445.

  • doc/datasets/conftest.py to implement the equivalent of nose fixtures
  • add conftest.py in root folder to ensure that sklearn local folder
    is used rather than the package in site-packages
  • test doc with pytest in Travis
  • move custom_data_home definition from nose fixture to .rst file
@lesteve
Make it possible to run doctests in .rst files with pytest 
* doc/datasets/conftest.py to implement the equivalent of nose fixtures
* add conftest.py in root folder to ensure that sklearn local folder
  is used rather than the package in site-packages
* test doc with pytest in Travis
* move custom_data_home definition from nose fixture to .rst file

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@lesteve lesteve referenced this pull request Sep 6, 2017

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[noWIP] Pytest doctests #9465

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after this they don't run with nose any more, do they?

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amueller commented Sep 8, 2017

after this they don't run with nose any more, do they?
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after this they don't run with nose any more, do they?

doctests still run fine with nose. The Travis build are exactly as before with 3 builds using nose and 1 using pytest.

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lesteve commented Sep 8, 2017

after this they don't run with nose any more, do they?

doctests still run fine with nose. The Travis build are exactly as before with 3 builds using nose and 1 using pytest.
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But the fixtures are not run any more for nosetests, right? So that means it downloads the datasets?

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amueller commented Sep 8, 2017

But the fixtures are not run any more for nosetests, right? So that means it downloads the datasets?
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The nose fixtures files i.e. *_fixture.py are still there so for nose everything is behaving as previously. The only thing I did was to put the custom_data_home definition in the mldata.rst rather than in the fixture globs. Although there is doctest_namespace that is similar for pytest, the complication did not seem worth the effort IMO.

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lesteve commented Sep 9, 2017

The nose fixtures files i.e. *_fixture.py are still there so for nose everything is behaving as previously. The only thing I did was to put the custom_data_home definition in the mldata.rst rather than in the fixture globs. Although there is doctest_namespace that is similar for pytest, the complication did not seem worth the effort IMO.
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ah ok, lgtm

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amueller commented Sep 10, 2017

ah ok, lgtm

@amueller amueller changed the title from [MRG] Make it possible to run doctests in .rst files with pytest to [MRG + 1] Make it possible to run doctests in .rst files with pytest Sep 10, 2017

@jnothman jnothman merged commit ea41a78 into scikit-learn:master Sep 10, 2017
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ci/circleci Your tests passed on CircleCI!
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codecov/patch Coverage not affected when comparing fb64216...8072a8f
Details
codecov/project 96.17% remains the same compared to fb64216
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continuous-integration/appveyor/pr AppVeyor build succeeded
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continuous-integration/travis-ci/pr The Travis CI build passed
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lgtm analysis: Python No alert changes
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jnothman added a commit to jnothman/scikit-learn that referenced this pull request Sep 12, 2017

@lesteve @jnothman
CI Make it possible to run doctests in .rst files with pytest (#9697) 
* doc/datasets/conftest.py to implement the equivalent of nose fixtures
* add conftest.py in root folder to ensure that sklearn local folder
  is used rather than the package in site-packages
* test doc with pytest in Travis
* move custom_data_home definition from nose fixture to .rst file
e6de8e5

amueller added a commit to amueller/scikit-learn that referenced this pull request Sep 12, 2017

@lesteve @amueller
CI Make it possible to run doctests in .rst files with pytest (#9697) 
* doc/datasets/conftest.py to implement the equivalent of nose fixtures
* add conftest.py in root folder to ensure that sklearn local folder
  is used rather than the package in site-packages
* test doc with pytest in Travis
* move custom_data_home definition from nose fixture to .rst file
ea21db7

massich added a commit to massich/scikit-learn that referenced this pull request Sep 15, 2017

@lesteve @massich
CI Make it possible to run doctests in .rst files with pytest (#9697) 
* doc/datasets/conftest.py to implement the equivalent of nose fixtures
* add conftest.py in root folder to ensure that sklearn local folder
  is used rather than the package in site-packages
* test doc with pytest in Travis
* move custom_data_home definition from nose fixture to .rst file
749e73a

amueller added a commit to amueller/scikit-learn that referenced this pull request Sep 19, 2017

@amueller
Don't modify steps in Pipeline.__init__ 
remove outdated comment

fix also for FeatureUnion

[MRG+2] Limiting n_components by both n_features and n_samples instead of just n_features (Recreated PR) (#8742)

[MRG+1] Remove hard dependency on nose (#9670)

MAINT Stop vendoring sphinx-gallery (#9403)

CI upgrade travis to run on new numpy release (#9096)

CI Make it possible to run doctests in .rst files with pytest (#9697)

* doc/datasets/conftest.py to implement the equivalent of nose fixtures
* add conftest.py in root folder to ensure that sklearn local folder
  is used rather than the package in site-packages
* test doc with pytest in Travis
* move custom_data_home definition from nose fixture to .rst file

[MRG+1] avoid integer overflow by using floats for matthews_corrcoef (#9693)

* Fix bug#9622: avoid integer overflow by using floats for matthews_corrcoef

* matthews_corrcoef: cosmetic change requested by jnothman

* Add test_matthews_corrcoef_overflow for Bug#9622

* test_matthews_corrcoef_overflow: clean-up and make deterministic

* matthews_corrcoef: pass dtype=np.float64 to sum & trace instead of using astype

* test_matthews_corrcoef_overflow: add simple deterministic tests

TST Platform independent hash collision tests in FeatureHasher (#9710)

TST More informative error message in test_preserve_trustworthiness_approximately (#9738)

add some rudimentary tests for meta-estimators

fix extra whitespace in error message

add missing if_delegate_has_method in pipeline

don't test tuple pipeline for now

only copy list if not list already? doesn't seem to help?
307c360

@lesteve lesteve deleted the lesteve:run-doctests-with-pytest branch Oct 20, 2017

maskani-moh added a commit to maskani-moh/scikit-learn that referenced this pull request Nov 15, 2017

@lesteve @maskani-moh
CI Make it possible to run doctests in .rst files with pytest (#9697) 
* doc/datasets/conftest.py to implement the equivalent of nose fixtures
* add conftest.py in root folder to ensure that sklearn local folder
  is used rather than the package in site-packages
* test doc with pytest in Travis
* move custom_data_home definition from nose fixture to .rst file
d16e7a9

@jorisvandenbossche jorisvandenbossche referenced this pull request Nov 22, 2017

Merged

CLN: remove nose fixtures in docs #10187

jwjohnson314 pushed a commit to jwjohnson314/scikit-learn that referenced this pull request Dec 18, 2017

@lesteve Jeremiah Johnson
CI Make it possible to run doctests in .rst files with pytest (#9697) 
* doc/datasets/conftest.py to implement the equivalent of nose fixtures
* add conftest.py in root folder to ensure that sklearn local folder
  is used rather than the package in site-packages
* test doc with pytest in Travis
* move custom_data_home definition from nose fixture to .rst file
6f5b6cb
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