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common-workflow-language

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CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.

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user_guide
dshepelev15
dshepelev15 commented Aug 8, 2019

Can someone explain to me how to use InitialWorkDir requirements without any input parameters.
For instance, I need to put my shell scripts near with cwl script and run them from that cwl script. Is there some way don't use absolute path to scripts? I tried to use EnvVariable like that:

baseCommand: sh
arguments: [$SCRIPT_FOLDER/script.sh]

But it is not working.

Then I foun

Created by Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community

Released January 2015

Organization
common-workflow-language
Website
www.commonwl.org
Wikipedia
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