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The Wayback Machine - https://web.archive.org/web/20220403063350/https://github.com/topics/rmsd
Here are
31 public repositories
matching this topic...
An open library for the analysis of molecular dynamics trajectories
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
Updated
Jan 26, 2022
Python
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
Updated
Jan 3, 2022
Python
📐 Symmetry-corrected RMSD in Python
Updated
Feb 23, 2022
Python
register 3D point clouds using rotation, translation, and scale transformations.
Updated
Mar 21, 2022
Python
header-only C++ library for registering 3D point clouds using rotation, translation, and scale transformations
Python script that receives a molecular dynamics or Monte Carlo trajectory and performs agglomerative clustering to classify similar structures.
Updated
Aug 16, 2021
Python
VMD plugin to calculate and visualize clusters of conformations for a trajectory
PCA and normal mode analysis of proteins
Updated
May 11, 2021
Python
A protein fragments picker
Updated
Sep 26, 2019
OCaml
Molecular Crystal Simulation Library (mcse) is an open-source Python package for manipulating and analyzing molecular crystal structures
Updated
Feb 28, 2022
Python
Tool to calculate the root mean square deviation between molecular structures
Updated
Mar 29, 2021
Fortran
Command line recipes for the working chemoinformatician
MODE-TASK plugin for PyMOL
Updated
Mar 18, 2019
Python
Calculate and apply the optimal transformation matrix that minimizes the RMSD (root mean squared deviation) between two paired sets of points.
Updated
Mar 13, 2019
JavaScript
aligns arbitrarily ordered isomers
Updated
Dec 28, 2019
Python
📐 Implementation of the c-RMSD and d-RMSD algorithms
Updated
Apr 23, 2021
Jupyter Notebook
VMD plugin for rmsd calculation and fitting of molecular structures
open toolbox for structural comparison, a fork aiming a deployment without PyInstaller under Linux. Note the project «aRMSD-minimalWindowsSupport», too.
Updated
Dec 13, 2018
Python
Compute a moving root mean squared error (RMSE) incrementally.
Updated
Apr 1, 2022
Makefile
Superimpose a set of protein structures and report a RSMD matrix, in CSV and Mega-compatible formats.
Updated
Jul 6, 2020
Julia
Project for analysis of protein structures in .pdb file format. It calculates some structure parameters and can compare two structures by calculating the RMSD.
Updated
Feb 16, 2021
Python
interactive Trajectory Comparison
Compute the root mean squared error (RMSE) incrementally.
Updated
Apr 1, 2022
Makefile
VMD plugin to swap coordinates between atoms in a molecule
F@H Data Analysis: Root-mean-square Deviation & Radius of Gyration Calculations
Updated
Nov 10, 2017
Perl
Clustering for molecular configurations
Fortran code of Quaternion Characteristic Polynomial (QCP) superposition method
Updated
Apr 26, 2017
Fortran
Superimpose a set of protein structures and report a RSMD matrix, in CSV and Mega-compatible formats, using Pymol as a module
Updated
Jul 6, 2020
Python
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