MMseqs2: ultra fast and sensitive search and clustering suite

MeShClust: an intelligent tool for clustering DNA sequences

Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab

Cluster up to millions of peptide sequences on shared sequence motifs.

MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

Code to reproduce the experiments and the proposed visualization from 'Data mining in the development of mHealth apps: assessing in-app navigation through Markov Chain analysis'

CD HIT cluster file parser

Dereplicate long sequences