Structural variant and indel caller for mapped sequencing data
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Dec 21, 2022 - C++
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indels
Here are 46 public repositories matching this topic...
Strelka2 germline and somatic small variant caller
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Dec 29, 2021 - C++
Structural variation and indel detection by local assembly
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Jun 10, 2025 - C++
Microassembly based somatic variant caller for NGS data
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Jun 23, 2022 - C
A method for variant graph genotyping based on exact alignment of k-mers
ngs bayesian-inference variant-calling indels gibbs-sampling structural-variation snvs dna-sequencing genotyping k-mers variant-graphs
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Apr 1, 2019 - C++
ClairS - a deep-learning method for long-read somatic small variant calling
bioinformatics deep-learning nanopore genomics somatic-variants haplotypes pacbio somatic-mutations illumina indels phasing snvs long-reads ont long-read-sequencing short-reads
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Jun 3, 2025 - Python
Generic human DNA variant annotation pipeline
docker workflow gene singularity vcf variants snv vep disease-gene-association indels annotation-tool vcfanno germline variant-annotations annotation-framework snvs
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Feb 13, 2024 - Python
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
sequencing variants alignment crispr-analysis indigo variant-calling pcr indels crispr-cas9 sanger-chromatograms indel-discovery alleles gear-genomics sanger-sequencing pcr-products chromatogram-traces
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Oct 31, 2024 - JavaScript
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
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Dec 26, 2023 - Perl
A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
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Jun 2, 2021 - R
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.
bioinformatics snps genomics nextflow cancer somatic-variants ngs metagenomics bioinformatics-pipeline rnaseq variant-calling transcriptomics indels bioinformatics-analysis bioinformatics-scripts germline-variants research-computing nextflow-pipelines sydney-informatics-hub
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Feb 28, 2025
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
gwas genome variants meta-analysis indels chromosome association-studies gwas-dataset allele-frequencies allele-counts
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Apr 8, 2025 - Shell
Snakemake-based computational workflow for neoantigen prediction from diverse sources
snakemake gene-fusion indels immunotherapy vaccine peptide snakemake-workflow splicing epitope neoantigens exitron neoepitope
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Apr 5, 2025 - Python
A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
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Feb 1, 2024 - R
xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
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Oct 21, 2020 - Python
🐳 Dockerized WES pipeline for variants identification in mathced tumor-normal samples
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May 27, 2020 - Python
Barton and Zeng (2019) - Pipeline for great tit indel analysis.
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Apr 8, 2019 - Python
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