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vcf
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cython + htslib == fast VCF and BCF processing
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Jul 28, 2021 - Python
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bioinformatics
snps
medicine
genomics
genome
cancer
biology
vcf
ensembl
medical
cancer-genomics
genome-annotation
proteomics
gtf
bed
cancer-genomes
genome-sequencing
genome-browser
genomes
csv-parser
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Sep 21, 2020 - Python
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Jan 20, 2021 - Perl
annotate a VCF with other VCFs/BEDs/tabixed files
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Jul 21, 2021 - Go
Toolset for SV simulation, comparison and filtering
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Jul 27, 2021 - C++
Personal Cancer Genome Reporter (PCGR)
interpreter
cancer
clinical
tumor
vcf
cancer-genomics
reporting-engine
copy-number-variation
annotation-tool
somatic
cancer-variants
annotation-framework
snvs
oncology-data
precision-oncology
variant-interpretation
therapeutic-targets
precision-cancer-medicine
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Jun 30, 2021 - R
Syntax highlighting for computational biology
syntax-highlighting
vim
less
bioinformatics
pdb
sublime-text
computational-biology
gedit
vcf
fasta
bam
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Jul 29, 2021 - Shell
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
snps
binary
nexus
vcf
phylogenetics
alignment
fasta
snapp
phylip
vcf-files
polyploid
haploid
phylogenetic-analysis
outgroup
convert-snps
vcf-format
phylip-matrix
diploid
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Aug 14, 2021 - Python
Structural variant toolkit for VCFs
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Aug 20, 2021 - Python
machine learning for genomic variants
emr
aws
bioinformatics
gwas
genome
random-forest
notebook
vcf
databricks
association-studies
variant-spark
variantspark
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Apr 25, 2021 - JavaScript
Graph realignment tools for structural variants
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Apr 16, 2021 - C++
Bayesian genotyper for structural variants
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Mar 6, 2021 - Python
convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf
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Aug 27, 2019 - Perl
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
evolution
perl
next-generation-sequencing
vcf
population-genetics
dnds-estimation
molecular-evolution
nucleotide
fasta-sequences
vcf-files
diversity-measurement
sequence-analysis
dnds
natural-selection
snp-report
nucleotide-diversity
evolutionary-parameters
substitution-rate
nei-gojobori
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Jul 5, 2021 - Perl
Learning the Variant Call Format
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Aug 8, 2021 - HTML
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It looks strange to have the VQL autocompleter adding a space ..
It makes query like this :
Please remove the space insert after autocompletion .