The Wayback Machine - https://web.archive.org/web/20220712004524/https://github.com/topics/microarray

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microarray

Here are 71 public repositories matching this topic...

mikelove / bioc-refcard

Bioconductor cheat sheet

bioinformatics r howto guide cheatsheet bioconductor rnaseq compbio microarray

Updated Feb 17, 2022
R

guma44 / GEOparse

Python library to access Gene Expression Omnibus Database (GEO)

bioinformatics rna-seq microarray rna-sequencing geo-database high-throughput-sequencing htseq

Updated Oct 1, 2021
Jupyter Notebook

greenelab / TDM

R package for normalizing RNA-seq data to make them comparable to microarray data.

package rna-seq r microarray data-processing

Updated Apr 4, 2022
R

greenelab / RNAseq_titration_results

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

machine-learning bioinformatics analysis cancer gene-expression rnaseq microarray normalization supplement

Updated Jul 8, 2022
R

Bohdan-Khomtchouk / HeatmapGenerator

Cross-platform GUI desktop application for making biological heatmaps

lightweight c-plus-plus rna-seq opengl heatmap computational-biology gui-application microarray r-programming

Updated Jun 17, 2022
C

zwdzwd / sesame

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

bioinformatics microarray dna-methylation

Updated Jul 3, 2022
R

gustaveroussy / EaCoN

Easy Copy Number !

r microarray segmentation copy-number exome-sequencing

Updated Oct 18, 2021
R

allielarocco / Microarray-Analysis

Microarray Analysis Pipeline in Python

pipeline microarray ncbi-submission differential-expression enrichment-analysis ncbi-geo ncbi-database microarray-studies differentially-expressed-genes microarray-experiments

Updated Aug 1, 2019
Jupyter Notebook

HenrikBengtsson / aroma.affymetrix

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

package r analysis hpc notebook dna expression microarray rna reproducibility large-scale affymetrix copy-number

Updated Jan 6, 2021
R

dlaperriere / GEO_microarrays

analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)

bioinformatics microarray ncbi-geo limma

Updated Aug 1, 2021
Python

Pytorch-UNet-2

upashu1 / Pytorch-UNet-2

UNet 2.0 - Pytorch implementation of the U-Net 2.0 for image semantic segmentation, with processing blocks for noisy images

cnn pytorch microarray image-segmentation unet unet-pytorch unet-image-segmentation unet-model unet2 microarray-image-segmentation-cnn microarray-deep-learning image-segmenation-unet

Updated Oct 4, 2019
Python

XPRESSyourself / XPRESSplot

A toolkit for navigating and analyzing gene expression datasets

visualization rna-seq genomics analysis rnaseq microarray plotting

Updated May 12, 2022
Python

viktormiok / tigaR

Temporal Integrative Genomics Analysis in R

rna-seq microarray inla differential-gene-expression empirical-bayes

Updated Apr 30, 2022
R

michaeltneylon / spark_rma

SparkRMA: Robust Multi-array Average (RMA) In Apache Spark

spark scalable microarray preprocessing rma

Updated Jun 8, 2018
Python

viktormiok / PhD-thesis

Latex scripts to compile my PhD thesis

rna-seq microarray splines ridge-regression multivariate-timeseries cervical-cancer gene-regulatory-network-inference

Updated Feb 8, 2022
TeX

tarlaun / BioInf_Project

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

bioinformatics microarray microarray-data aml acute-myeloid-leukemia geoparse microarray-data-analysis genetic-expression-omnibus

Updated May 27, 2021
Python

idssplab / overall_survival_nsclc

bimodal DNN for NSCLC patient overall survival prediction

bioinformatics deep-neural-networks deep-learning microarray biomarkers clinical-data prognostic-biomarkers overall-survival-prediction bimodal-multicast non-small-cell-lung-cancer

Updated May 20, 2020

draeger-lab / InCroMAP

Integrated analysis of Cross-platform MicroArray and Pathway data

visualization microarray data-integration pathway-analysis

Updated May 17, 2018
Java

viktormiok / PhD-thesisSM

PhD thesis supplementary materials

rna-seq microarray splines ridge-regression multivariate-timeseries cervical-cancer

Updated Feb 24, 2022
TeX

viktormiok / tigaRcycle

Detection of circadian signals from omics time series data in response to different diets

rna-seq r microarray cycling circadian-rhythmicity omics-data

Updated Feb 24, 2022
Jupyter Notebook

viktormiok / BioFig

R package for visualization of omics data

quality-control rna-seq microarray proteomics

Updated Mar 2, 2022
R

hexhead / inbix

In silico research group's bioinformatics toolbox for network and machine learning analysis

bioinformatics rna-seq snps genetics systems-biology plink microarray genes networks interactions analyses relief-f

Updated Nov 30, 2018
C++

WeiqiangZhou / BIRD-data

A dataset for big data prediction.

dnase-seq genomics gene-expression microarray prediction-model

Updated Jul 18, 2019

gustaveroussy / apt.oncoscan.2.4.0

Affymetrix OncoScan / OncoScan_CNV processing using apt-copynumber-onco-ssa (2.4.0)

r microarray normalization affymetrix

Updated Dec 6, 2018
R

anacarolina-estat / Iniciacao-Cientifica-CNPq

Projeto de Iniciação Científica desenvolvido na Unicamp e financiado pelo CNPq com o tema: Métodos de aprendizado de máquina supervisionado para classificação aplicados a dados de microarranjo de DNA.

machine-learning r estatistica microarray

Updated Sep 25, 2020

cemordaunt / AutismCordBloodExpression

Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies

gene-expression microarray autism meta-analysis affymetrix

Updated Jan 12, 2022
R

RGLab / HIPCMatrix

Utilities for processing and analyzing HIPC gene expression data in ImmuneSpace

rna-seq microarray immunespace immport hipc

Updated May 27, 2022
R

qPCR4vir / VisualOliDeg

design of primers and probes for PCR/microarray by visual selection from aligned DNA sequences

primer science bioinformatics excel microarray pcr workbook aligned-dna-sequences

Updated Dec 16, 2016
Visual Basic

hexhead / Rinbix

R package implementations and interfaces to In silico research group's bioinformatics toolbox inbix

bioinformatics rna-seq r analysis genetics bioinformatics-pipeline microarray bioinformatics-analysis bioinformatics-scripts rpackage

Updated Nov 29, 2018
R

SaradhaVenkatachalapathy / Cell_Shape_TNF_alpha_PNAS_2017

Analysis in the paper Mitra et.al. PNAS 2017.

microarray inflammation filament-detection cell-shape

Updated Jul 19, 2020

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