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singularity-container

Here are 151 public repositories matching this topic...

apptainer / singularity

Open

Emit progress information during SIF creation

8

mikegray commented Jun 13, 2019

Version of Singularity:

3.0.3

Expected behavior

Some progress or update information during the creation of the SIF file.

Actual behavior

During "Creating SIF file..." step, the console does not produce any visible output for the user - but does create the resulting file eventually.

Steps to reproduce behavior

I was executing a few “larger” builds through the bui

Read more

Enhancement ImageBuilding good first issue

Open

Documentation of -S and -W are meaningless

4

Open

all calls to exec.Command should go through the cmd package

5

Find more good first issues

ReproNim / neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

linux docker science dockerfile reproducible-research containers neuroscience singularity-container nipype

Updated Jan 23, 2022
Python

hpcng / nomad-driver-singularity

Open

[Error] Could not get exit code for failed program

3

ArangoGutierrez commented Apr 24, 2019

@bilke reported an error on slack

Apr 24 15:40:15 singularity1 nomad[789]:     2019-04-24T15:40:15.196+0200 [INFO ] client.alloc_runner.task_runner.task_hook.logmon.nomad: opening fifo: alloc_id=f9bd314e-57d3-56bb-bbb8-8eb9ff6f87e5 task="moo moo" @module=logmon path="/var/nomad/alloc/f9bd314e-57d3-56bb-bbb8-8eb9ff6f87e5/alloc/logs/.moo moo.stdout.fifo" timestamp=2019-04-24T15:40:15.195+0200

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bug help wanted good first issue

kaczmarj / singularity-in-docker

Singularity in Docker!

docker hpc containers singularity singularity-container

Updated Nov 30, 2021
Dockerfile

pydicom / dicom-containers

singularity and Docker containers to easily get started with common dicom tools

docker container dicom singularity singularity-container pydicom dcm2k pynetdicom

Updated May 3, 2020
Dockerfile

singularityhub / sregistry-cli

Singularity Global Client for container management

client singularity singularity-container singularity-hub singularity-registry

Updated Dec 16, 2020
Python

singularityhub / singularity2docker

convert a singularity image back to Docker, full circle! #containerfriends

docker converter singularity singularity-container

Updated May 29, 2020
Shell

dtrudg / clair-singularity

Scan Singularity container images using a Clair server

security-audit clair singularity-container

Updated Aug 3, 2021
Python

MACSE_V2_PIPELINES

ranwez / MACSE_V2_PIPELINES

This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

nextflow bioinformatics-pipeline sequence-alignments singularity-container sequence-alignment barcoding

Updated Aug 31, 2021
Shell

haavee / jiveplot

Python based plotting package for CASA MeasurementSet

visualization python plot singularity-container pgplot singularity-image casa-measurementset

Updated Aug 18, 2021
Python

singularityhub / singularity-ci

example builders for Singularity images using continuous integration

builder continuous-integration ci singularity singularity-container

Updated Aug 15, 2019

ArangoGutierrez / Singularity-on-Nomad

The Singularity on Nomad tutorial documents how to deploy Singularity on Nomad.

tutorial consul containers hashicorp nomad singularity-container

Updated Oct 6, 2017
Shell

ehw-fit / tf-approximate

Approximate layers - TensorFlow extension

python docker-container tensorflow convolution singularity-container tensorflow-library approximate-computing multipliers

Updated Sep 4, 2020
C

mmore500 / mwe-singularity-checkpoint

A minimal working example of DMTCP checkpoint-restart inside a Singularity container.

scientific-computing singularity-container dmtcp checkpoint-restart

Updated Dec 23, 2018
Shell

maxemil / PhyloMagnet

screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics

nextflow evolution next-generation-sequencing metagenomics phylogenetics singularity-container

Updated Oct 29, 2020
Nextflow

supercontainers / isc-tutorial

ISC 2021 -- Getting Started with Containers on HPC

docker tutorial hpc containers singularity supercomputer singularity-container shifter

Updated Jun 24, 2021
C++

spacebeam / starcraft-sif

Singularity: Brood War in a Container

torchcraft bwapi starcraft-broodwar singularity-container

Updated Apr 30, 2021
Shell

BIDS-Apps / ndmg

BIDS app for NeuroData's MRI to Graphs pipeline

docker-container bids singularity-container connectomics diffusion-mri

Updated Jan 30, 2018
TeX

singularityhub / singularity.lang

xml syntax file for formatting Singularity recipes in gedit

syntax-highlighting ubuntu gedit singularity singularity-container

Updated Sep 13, 2021
Vim script

singularity-catalog

singularityhub / singularity-catalog

The Singularity Community Catalog of Singularity* recipe files.

singularity singularity-container singularity-recipe singularity-catalog

Updated Jan 24, 2022
Singularity

singularityhub / language-singularity

Singularity syntax highlighting support for Atom

atom editor syntax highlighter singularity-container

Updated Feb 24, 2020
JavaScript

pydicom / pydicom.github.io

getting started with dicom in python

python api docker json dicom singularity singularity-container

Updated Jun 1, 2020
JavaScript

singularityhub / paraview-visualizer

Singularity container recipes to run the paraview visualizer

singularity visualizer paraview singularity-container

Updated Nov 27, 2018

singularityhub / interface

user interface for managing containers with sregistry global client, and making recipes

docker nginx flask containers management singularity-container

Updated Apr 20, 2018
HTML

vsoch / singularity-nginx

Sponsor

web application to serve (simple) singularity images

nginx singularity singularity-container singularity-containers

Updated Mar 19, 2017
Python

singularityhub / api

static API for community analysis of Singularity Hub containers

api open-source research singularity-container singularity-hub container-similarity

Updated Jun 22, 2018
Python

saravanabalagi / singularity_tensorflow

Sponsor

Singularity tensorflow containers for research and development

tensorflow singularity singularity-container development-platform

Updated Jul 7, 2021
Shell

alan-turing-institute / AI-workflows

A collections of portable, real-world AI workflows for testing and benchmarking

machine-learning ai hpc singularity singularity-container hut23 hut23-947

Updated Jan 5, 2022
Ruby

singularityhub / singularity-tunel

command line tool for general HPC functions using Singularity containers

python flask containers singularity container-management singularity-container singularity-containers

Updated Dec 6, 2021
CSS

singularityhub / stools-clair

An example of using stools-clair for Travis and Circle Continuous Integration

testing travis-ci ci singularity singularity-container circle-ci

Updated Apr 27, 2018

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