bioinformatics-scripts

Code for design of diagnostic PCR primers, and metabarcoding markers.

Detailed bioinformatics scripts and methods used in the NAM genome paper.

Bystro genetic analysis (annotation, filtering, statistics)

High-throughput gene to knowledge mapping through massive integration of public sequencing data.

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Scripts and procedures for detecting positively selected genes and codons in primates

生物信息学python代码，专注于重测序文本计算、处理

Explore biomolecular pathways in Reactome from the command-line or a Python script

A mosaic genome painting tool for plant genomes

This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid…

A suite of modules, pipelines, and tutorials for common DNA and RNA sequence analysis for use on the University of Sydney's High Performance Computing service.

Split multi fasta file into single fasta files

👨‍🔬 Analysis Pipelines and Useful Tools

Filter for reads from taxa of interest using Kraken2/Centrifuge classification results.

A collection of useful bioinformatics scripts.

Repo for running command line-based BLAST in Jupyter environment provided via Binder.

A set of processes/pipelines for bioinformatics

Простые биоинформатические скрипты на Python 3. Удобная и гибкая замена Excel/Calc для решения повседневных рутинных задач вычислительной биологии.

a sequence analysis workflow for low-input nanopore sequencing

Comparison of sequencing read mapping to pangenome graphs