Biology 230: Biology, 9 Edition by Raven, Johnson, Losos, Mason and Singer. 2011, Mcgraw Hill Inc
Biology 230: Biology, 9 Edition by Raven, Johnson, Losos, Mason and Singer. 2011, Mcgraw Hill Inc
Syllabus
Page 1
Dr. D. McShaffrey
Fall, 2014
Biology 230
Zoology
Instructor: Dr. Dave McShaffrey
Office: Rickey 242
Phone: 376-4743
Home: 374-8687
Textbooks:
Biology, 9th edition by Raven, Johnson, Losos, Mason and Singer. 2011, McGraw Hill Inc.
A field guide to insects, fish, reptiles or mammals of your choice.
Prerequisites: You must be a sophomore or have permission of the instructor to take this course.
Attendance: You are expected to attend all class and lab meetings. You must notify me in advance of any absence.
There will be one night hike and a morning birdwalk; attendance at one of these is mandatory and you
will get extra credit for the other.
Quizzes: Approximately every week; will cover all previous material and assigned reading for that date. Some
quizzes may be take home (i.e. homework) or on-line. No make-up on quizzes!
Exams: Two mid-term tests and a final; make-up by prior arrangement or legitimate excuse such as your own
death or illness. All quizzes/tests are comprehensive. There will also be a test on identification/scientific
names.
Papers: You will be required to write a very short paper based on primary literature, a short paper comparing two
animals, a web page on one of those animals, 1 lab report, a bibliography and a short paper on animal
care. (This IS a writing intensive [W] course).
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Syllabus
Page 2
Dr. D. McShaffrey
Fall, 2014
Grading:
Item
Points
Blog
25 pts
25 pts
25 pts
Paper
100 pts
Drawing
25 pts
Quizzes
100 pts
1st Mid-term
100 pts
2nd Mid-term
100 pts
Final
200 pts
Lab report 1
100 pts
Taxonomy Assignment
50 pts
Life List
50 pts
Practical
50 pts
50 pts
Total
Due Date
September 18
weekly
1000 pts
Field Experiences: You may complete field experiences for bonus points.
Your final grade will be determined as follows:
A+
97%
B+
87%
C+
77%
D+
67%
93%
83%
73%
63%
A-
90%
B-
80%
C-
70%
D-
60%
F < 60%
This is a writing-intensive course - failure to complete any of these assignments (or plagiarism in completing them)
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will
Syllabus
Page 3
Dr. D. McShaffrey
Fall, 2014
General Statement
Animals comprise most of the species on the planet. Compared to other groups of organisms, animals
attract our interest because many of them are able to move and perform various behaviors. In addition, as
animals ourselves, we pay attention to other animals because we know that in an ecological setting other animals
can be competitors, prey, predators or parasites.
We will spend time this semester on the mechanisms of evolution, on taxonomy, on physiology and on
such processes as body temperature regulation and development.
With biological knowledge doubling every 4 years, simply managing the information explosion becomes a
critical skill. You will gain experience with this in several ways. First, you will write papers for which you will have
to do significant research. Second, you will use a suite of computer programs to learn evolutionary relationships
and scientific names.
Overall Goals, Methods, and Criteria
(see learning goals document for specific learning goals)
Goal 1.
Goal 2.
Each student will learn the basics of reproduction, development, homeostasis, circulation, gas
exchange, evolution, development and ecology as they apply to animals. Each student will learn the
historical development of key ideas such as evolutionary and systematic theories, and will also learn
about the role zoology plays in society. Finally, each student will know the characteristics associated with
major groups.
Syllabus
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Dr. D. McShaffrey
Fall, 2014
Each student will learn how to gather zoological information from our library, and how to
assemble that information into a well-written report.
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Syllabus
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Dr. D. McShaffrey
Fall, 2014
Field Experiences
You cannot learn everything in biology in the classroom. This is particularly true of animals. To
understand them, you must observe them in their natural habitats. In addition to the laboratory, I have tried to
provide some alternates, in the form of field experiences that you can participate in for bonus points. I will give
you up to 20 points for completing them. Students who are physically disabled can make separate arrangements.
Valid field experiences include participating in the Marietta Natural History Society nature walks,
attending MNHS programs, attending weekend hikes led by a member of the biology department, projects at the
field station, or by pre-arranged substitutes. A MNHS program counts 5 points, a morning nature walk is worth 10
points, and an evening walk is worth 5 points. A weekend hike will be worth from 5-20 points depending on
length and other factors.
The Paper
Two consistent themes emerge whenever college teachers and employers mingle. Employers are
consistently looking for students who can write well, and who can work in groups. This assignment is meant to
give you practice at the former, as well as another important skill - acquiring and interpreting information
As a writing intensive course, you will be expected to clearly communicate your ideas in writing. We will
start with a short paper based on the primary literature. This assignment (details given in class) will help me
assess your writing skills. You will further develop those skills with the major paper described here, and with the
lab reports (see the lab section at the end).
The first step in writing the paper is for you to choose a taxon to research. This taxon will be paired with a
taxon identified by the instructor. The paper that you will write as part of this project will compare and contrast
the two taxa overall, and should cover at least three of the following categories:
1.
2.
3.
4.
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Dr. D. McShaffrey
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Fall, 2014
You should research the species thoroughly, consulting sources beyond your textbook and small
guidebooks. I expect to see evidence of significant library work, including recent references from the primary
sources (scientific journals). There need to be at least 20 valid scientific references (primary, secondary or tertiary
works produced for a scholarly audience). Ten of the references need to be from primary sources. Pay particular
attention to how you organize and arrange topics and the transitions between topics be sure to have a logical
development of your paper. Your paper should be illustrated with appropriate drawings, photographs, maps,
tables, etc. as you see necessary. I prefer original illustrations to those photocopied or downloaded from your
sources. Of course the paper will be typed, with no grammatical or spelling errors. Keep the text of the paper
between 15-20 pages. Cite all references in the text following the style used in Biology 105.
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Syllabus
Dr. D. McShaffrey
Page 7
Fall, 2014
The next most common mistake I encounter (after failing to cite a reference at all) is what I call lumping.
This occurs when all of the information you use in a paragraph comes from the same source, and you try to
reference that source simply by putting it at the end of the paragraph. That is not acceptable. You must
acknowledge a source within the sentence (or clause) in which you use it. If that means that each sentence in
your paragraph ends with (Brown, 1986, p. 54), so be it. If that monotony bothers you (and it should), you can
avoid it by finding more sources to cite, or citing the one source in different ways: Brown (1986 pp. 54-58),
according to Brown (1986 p. 1017), Brown (1986 p. 56, 59, 314) also found, and so on. The reason for this is
simple in a scientific paper, any information that is not cited directly is assumed to have been generated by the
author(s). A single citation at the end of a paragraph makes it unclear as to which ideas came from the author,
and which were taken from another source.
A note on quotes: In the humanities, frequently the exact wording of the ideas of the author under
consideration is critical to the readers understanding of the points being made in the paper. In this context, it is
necessary to use exact quotes (with citations!). In the sciences, we are supposed to be objective. This means
writing methods sections in the passive voice to avoid the use of the pronoun I, which distracts the reader from
the work that was done and focuses attention on the scientist who performed it. Quotes also take emphasis away
from the results and put emphasis on personalities. Unless the exact wording of the author you are citing is
critical to the concept you are reviewing, paraphrase the author(s) and cite appropriately. Note that changing
one or two words is not enough to paraphrase correctly it must be a substantial revision, or again, you will be
guilty of plagiarism. One way to avoid inadvertently quoting an author exactly is to paraphrase as you make
notes, and then paraphrase your notes as you write your paper.
At the end of the paper, you must have a section listing all the papers you have cited. Again, follow the
format used in Biology 105. Do yourself a favor, and find an article now (preferably one dealing with your topic)
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Dr. D. McShaffrey
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Fall, 2014
that uses a similar style, and photocopy it, so that you can use it as a guide to solving different style problems.
Note that journal articles are handled differently than books in the Literature Cited section. Pay attention to
where the periods and commas go, but dont get too paranoid about these be consistent.
O.K. I know what youre thinking where do I find these references in our library? First of all, our
library is an excellent source, and nothing to be ashamed of. What it lacks in size it makes up for in ease of use.
The following tips will help you get started:
Wikipedia can be a good start, but only use it as an overview. You cant cite Wikipedia, but it may lead you to
some good, scientific sources.
In general, get into the scientific literature databases (Biosis) ASAP.
Do a search:
Through Biological Abstracts and Biosis Previews or Google Scholar
By computer ProQuest Direct, Alta Vista, Yahoo, etc. Dont ignore the references the Biology
department has put online for you (see our home page: http://www.marietta.edu/~biol/index.html and go to the
information resources link http://www.marietta.edu/~biol/library/info.html).
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Dr. D. McShaffrey
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Fall, 2014
The problem with primary sources is that they are written by specialists, for specialists, and appear in
many different journals, some of which are hard to come by. Secondary journals help with this problem by
consolidating information on a given topic. Such articles are usually written by experts in a field, but often are
written for non-specialists or even lay people; most all are carefully referenced. The price is timeliness. Books
consolidate matters even further. Many conform to strict citation of sources, but some do not, making it difficult
to backtrack to original papers. Textbooks are in the same boat. While you may find useful information in nontechnical sources (Time magazine, U.S.A. Today, etc.), these rarely cite their sources and are thus scientific
hearsay inadmissible in court, so to speak. The same for encyclopedias, comic books, the little books that come
with insecticides, and so on yes, even your trusty invertebrate or vertebrate zoology class notes.
If its not clear already, let me be specific. You must have at least 20 sources, and these 20 sources may
not include any non-scientific sources. You may cite these, but you must have at least 20 other valid references.
At least 10 references must be from the primary literature. To help keep you on track, a bibliography will be due
before the paper is due. While the bibliography will not be graded, if it does not have 20 relevant references
(including 10 primary sources) then your papers grade will be reduced by 10%.
What about the Internet?
The Internet is a great way to find information, but as a general rule you cannot use it as a source for your paper
(see exceptions below). There are two main problems with using the internet. One is the reliability of
information, the other is the transitory nature of websites.
Information on the internet ranges from very reliable to plain junk. It is often impossible to tell exactly who is
placing the information there, and therefore what their motives and biases may be. In contrast, peer-reviewed
scientific journals (primary and secondary sources) have at least some credibility as the authors, reviewers and
editors are all placing their scientific credibility on the line. Also, a public journal is printed and put in libraries in
such a way that it can always be looked up in the future. By contrast, a web site may be removed, or the URL
changed, a day after you get the information. Your reader would not then be able to refer to your source.
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Dr. D. McShaffrey
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Fall, 2014
There are exceptions to the rule that you cant site internet sources. First, as mentioned above, you may cite
internet sources for non-scientific info, just as you can use tertiary sources in moderation to refer to social or
other information. Secondly, there are a number of places on the internet, such as the Electronic Journal Center
that have electronic copies of articles that also appear in print. These are OK because they are peer-reviewed
(reliable) and printed (permanent). You should cite them as if you were looking at the printed journal. There are
also purely electronic journals. These are peer-reviewed (reliable) and the publisher has made arrangements
satisfactory to the scientific community to ensure that they will always be available (we hope).
At each stage, your paper will be graded. When you submit the final draft, you must also turn in the marked copy
of your earlier draft so that I can check to be sure that you have made corrections. Failure to do so will result in a
grade penalty. Illustrations from one draft can be "recycled" in the final draft; they need not be redone. The
standards will increase with the final draft. Only the final grade will be recorded.
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Dr. D. McShaffrey
Fall, 2014
The following table may help you understand the criteria I use in grading:
A
Length
as assigned
as assigned
as assigned
Spelling
References
Organization
Grammar
Coverage of topics
few mistakes
as assigned
excellent
few, minor errors
excellent
attrocshus
few
non-existent
many major errors
whole sections skipped
neat, crisp
some misteaks
as assigned
adequate
few major errors
adequate - all items
covered
neat
maney misteakes
deficient
poor
several major errors
obvious weak areas
Appearance
some mistakes
as assigned
good
minor errors
good - some items not
covered in depth
neat
scraggly, unstapled
Readability
Reference citation
Paraphrasing
source
Flows
diligent
Well paraphrased
reads well
some missed
Not too far from the original
quote
choppy in spots
some missed
Quotes (with
quotation marks)
hard to follow
many missing or lumped
Misquotes (with quotation
marks)
dog-eared, torn,
unstapled
places unreadable in
plagiarism
Quotes (withOUT
quotation marks)
In grading a paper, I take all of the above into account, although I weigh some more than others. For instance, I will not give a paper an A if it
contains major grammatical errors or doesnt meet assigned standards such as number of references or page length.
Also, failure to include the page numbers in your citations will result in a significant grade reduction.
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Dr. D. McShaffrey
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Fall, 2014
Plagiarism: Plagiarism is the misrepresentation of work done by others as your own. This can come in a variety of forms,
including:
1.
2.
3.
4.
5.
Plagiarism is one of many forms of academic dishonesty Academic dishonesty is not allowed at Marietta College and will
be dealt with appropriately. Sanctions may include a lowered grade (including a 0) for an assignment, failing the course, or
even expulsion from the college.
I have noticed that most cases of plagiarism result from panic at a looming deadline, and an inability to get started on a
project. If you find yourself in the wee hours of the morning with a looming deadline and realize you will not be able to
complete the project (or are tempted to do some cut-and-paste to make the deadline) send me an email outlining the
problem and contact me ASAP in the morning. We will try to work out something. There will be a penalty, but it will not be
as severe as what will happen if you plagiarize. If you plagiarize I will flunk you for the course.
"Dishonesty within the academic community is a very serious matter, because dishonesty destroys the basic trust necessary for a healthy
educational environment. Academic dishonesty is any treatment or representation of work as if one were fully responsible for it, when it is in fact
the work of another person. Academic dishonesty includes cheating, plagiarism, theft, or improper manipulation of laboratory or research data or
theft of services. A substantiated case of academic dishonesty may result in disciplinary action, including a failing grade on the project, a failing
grade in the course, or expulsion from the College. (Marietta College Undergraduate Programs, 2014-2015 Catalog, p.130.)
TurnItIn.Com
Please note that by enrolling in this class you are agreeing to submit your papers online to a plagiarismprevention program called TurnItIn.com. You should note that TurnItIn.com always without your name and
any personal information will retain your paper as part of their database so that students who plagiarize from it
can be detected.
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Dr. D. McShaffrey
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All services for students with disabilities are coordinated through the Academic Resource Center (ARC). Recent documentation of a students disability from a licensed psychologist, psychiatrist, or physician must be provided to the ARCs Disabilities Specialist who is
responsible for reviewing documentation, interviewing the student for the current functional impact and determining reasonable
accommodations or adjustments for coursework at the College. The request process continues with each faculty member at the outset of
each academic course to discuss individual class-specific needs and to facilitate arrangements for specific classroom accommodations.
On-going individualized guidance is available from the Disabilities Specialist to include referrals to outside agencies for testing and
assessment as necessary. Additionally, adaptive/assistive technology (such as the Kurzweil 3000 Scan/Read System, and Dragon
Naturally Speaking Dictation Software) and other personalized services are available based upon documented needs. Other services
available include tutoring, study skills assistance, access to adaptive and assistive technology and personalized services based upon
documented needs.
Students needing assistance with disability-related issues should contact the ARC (Andrews Hall, 376-4700, [email protected]) for more
information. In addition, students must discuss individual class-specific needs with each faculty member at the outset of each academic
course.
Marietta College complies with Section 504 of the Rehabilitation Act of 1973 and the Americans with Disabilities Act regarding nondiscrimination against persons with disabilities. The College seeks to offer support to all students and strives to make reasonable
accommodations for individuals with documented disabilities.
Health and Wellness: A recent American College Health Survey found stress, sleep problems, anxiety,
depression, interpersonal concerns, death of a significant other and alcohol use among the top ten health
impediments to academic performance. Students experiencing personal problems or situational crises during the
semester are encouraged to contact the Dr. J. Michael Harding Center for Health and Wellness (740-376-4477)
for assistance, support and advocacy. This service is free and confidential.
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Paper Assignments
Taxon
Taxon
Student
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
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Tentative Schedule
Date
Day
Topic
Reading
Lab
1
1
Aug. 26
Aug. 28
T
TH
Introduction
Evolution - the basics
Handout
Chapter 20
Introduction/Collection Tech
.
2
2
Sept. 2
Sept. 4
T
TH
Evolution - history
Evolution of Species
Chapter 21
Chapter 22
Aquatics Collecting
3
3
Sept. 9
Sept. 11
T
TH
Chapter 32
4
4
Sept. 16
Sept. 18
T
TH
Systematics
Chapter 23
5
5
Sept. 23
Sept. 25
T
TH
6
6
Sept. 30
Oct. 2
T
TH
7
7
Oct. 7
Oct. 9
T
TH
Fall Break
Oct. 14
Coelomate Invertebrates
Chapter 34
ID/Data Analysis
Oct. 16
TH
9
9
Oct. 21
Oct. 23
T
TH
Arthropods
Vertebrates
Chapter 34.5
Chapter 35
10 Oct. 28
10 Oct. 30
T
TH
Fish
Papers Due!!
Chapter 35
ID
11 Nov. 4
11 Nov. 11
T
TH
Exam 2
Amphibians
Chapters 33-34
Chapter 35
ID
Drawings Due
12 Nov. 18
Reptiles
Chapter 35
12 Nov. 20
TH
13 Nov. 25
Birds
Chapter 35
13 Nov. 27
14 Dec. 2
14 Dec. 4
TH
T
TH
SYLLA230_14.docx
Field Station
Noncoelomate Invertebrates
Chapter 33
Field Station
Field Station
Bibliography Due
Field Experiment
Mammals
Thanksgiving
Chapter 35
Final:
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Lab Practical:
What about the origins and chemistry of life? Cells? Cellular metabolism? Genetics? Nervous Coordination? Immunity? Animal Behavior? Animal Ecology?
Development? Well, we cant cover all of these in a single semester. You will find that these topics are covered in detail in semester long courses of their own.
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Taxa To Be Covered
Phylum Porifera
Class Calcarea
Phylum Annelida
Class Hexactinellida
Class Polychaeta
Class Demospongiae
Class Oligochaeta
Phylum Placozoa
Phylum Cnidaria
Class Hirudinea
Phylum Bryozoa (Ectoprocta)
Class Hydrozoa
Phylum Sipuncula
Class Scyphozoa
Phylum Kinorhyncha
Class Cubozoa
Phylum Priapulida
Class Anthozoa
Phylum Loricifera
Phylum Ctenophora
Phylum Tardigrada
Phylum Acoela
Phylum Onychophora
Phylum Platyhelminthes
Phylum Brachiopoda
Class Turbellaria
Phylum Gnathostomulida
Class Trematoda
Phylum Acanthocephala
Class Monogenea
Phylum Gastrotricha
Class Cestoda
Phylum Entoprocta
Phylum Mesozoa
Phylum Arthropoda
Phylum Nemertea
Subphylum Trilobita
Phylum Cycliophora
Subphylum Chelicerata
Phylum Nematoda
Class Arachnida
Phylum Nematomorpha
Order Aranae
Phylum Rotifera
Order Acari
Phylum Mollusca
Order Scorpiones
Class Polyplacophora
Subphylum Myriapoda
Class Gastropoda
Class Chilopoda
Class Bivalvia
Class Diplopoda
Class Cephalopoda
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Subphylum Crustacea
Order Coleoptera
Class Branchiopoda
Order Lepidoptera
Class Ostracoda
Order Diptera
Class Maxillopoda
Order Trichoptera
Class Malacostraca
Order Siphonaptera
Order Decapoda
Order Hymenoptera
Order Isopoda
Phylum Chaetognatha
Order Amphipoda
Phylum Echinodermata
Subphylum Hexapoda
Class Insecta
Class Crinoidea
Class Asteroidea
Order Ephemeroptera
Class Ophiuroidea
Order Odonata
Class Echinoidea
Order Orthoptera
Class Holothuroidea
Order Dermaptera
Phylum Hemichordata
Order Plecoptera
Order Isoptera
Phylum Chordata
Order Mallophaga
Order Anoplura
Subphylum Urochordata
Order Hemiptera
Subphylum Cephalochordata
Order Homoptera
Order Neuroptera
Subphylum Vertebrata
Superclass Agnatha
Class Myxini
Class Cephalaspidomorphi
Class Ostracodermii
Superclass Gnathostomata
Class Placodermii
Class Chondrichthyes
Class Actinopterygii
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Class Sarcopterygii
Class Amphibia
Order Apoda
Order Caudata (Urodela)
Order Anura
"Class" Reptilia
Subclass Anapsida
Order Chelonia
Subclass Diapsida
Order Squamata
Suborder Sauria
Suborder Amphisbaenia
Suborder Serpentes
Order Rhynchocephalia
Order Icthyosauria
Order Plesiosauria
Order Crocodilia
Order Pterosauria
Order Saurischia
Suborder Sauropodomorpha
Suborder Theropoda
Birds
Order Ornithischia
Subclass Synapsida
Order Pelycosauria
Order Therapsida
Mammals
Class Aves
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Class Mammalia
Subclass Prototheria
Infraclass Ornithodelphia
Order Monotremata
Subclass Theria
Infraclass Metatheria
Various Marsupial orders
Infraclass Eutheria
Order Insectivora
Order Carnivora
Order Chiroptera
Order Proboscidea
Order Primates
Order Sirenia
Order Edentata
Order Perissodactyla
Order Lagomorpha
Order Artiodactyla
Order Rodentia
Order Cetacea
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Biology 230
Zoology
Lab Syllabus
Textbooks:
In addition, you must obtain a field guide (to insects, fish, mammals, or reptiles and amphibians)
Lab Fee: A lab fee of $20 may be charged to offset costs of field trips and supplies.
Attendance:
You are expected to attend all lab meetings. You must notify me in advance of any absence.
Unexcused absences will cost you 10 pts; excused absences will cost you 5 points and may be made up
by field experiences at a 0.5 to 1 point ratio.
Exams: One practical (final); make-up by prior arrangement or legitimate excuse such as your own death or
illness.
Field Experiences: You may complete field experiences for up to 10 bonus points. A single field experience
cannot count for both lab and class, and if you have an excused absence from lab, any field experiences will
only count 1/2 until the deficit is made up.
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Grading:
Scale:
Lab reports, 1 @100
100 pts
Taxonomy Assignment
50 pts
Life List
50 pts
Practical
50 pts
50 pts
________
300 pts
Lab reports are to follow formatting and instructions as used in Biology 105/106. See me if you need a
copy of these instructions; they are also located on the website.
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Taxonomy assignment: Each student will serve as an expert identifying organisms within an invertebrate
group of the students choosing. The class as a whole will have to find 75 species of invertebrates; 1 point will
be deducted for each species short of the goal.
Student
Taxon
# of Species
10
11
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Life List: The class will identify at least 25 vertebrates in the field. Bonus points for more.
Animal care/curation: You will be assigned a group of animals to care for and a series of specimens to curate;
the grade will be awarded on the basis of that care and a 5 page paper summarizing what you learned.
Team Responsible
August 25- Sept 25
Sept 25 Oct. 30
Oct. 30 Dec. 12
Display Tank
Intro Lab
Zoology Lab
Greenhouse
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Team 1
Team 2
Team 3
Team 4
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