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EstrellaXD/pyRawTools

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pyRawTools

pyRawTools is a Python package for Windows/Linux/Mac processing raw data from mass spectrometry experiments. Base on RawTools and UNIX command line.

Install

  1. Must install mono
    1. For macOS, use brew to install mono
     brew install mono
    1. For Linux, use apt or yum to install mono
     sudo apt install mono-complete
  2. Install or Build
    1. Install

      1. pip install pyRawTools
    2. Build

      1. Clone this repository
        git clone https://github.com/EstrellaXD/pyRawTools.git
      2. Install python package
        cd pyRawTools
        python setup.py install

Usage

  1. Convert raw file to pandas DataFrame
from pyRawTools import MSLoader


loader = MSLoader()
raw_data, raw_metrix = loader.load('path/to/raw/file.RAW')

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A python library for Linux/macOS to read Thermo RAW file.

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