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biocore

Collaboratively developed bioinformatics software.

117 followers
Cyberspace
http://biocore.github.io/

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gneiss gneiss Public

compositional data analysis toolbox

Jupyter Notebook 59 27

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Showing 10 of 89 repositories

microsetta-interface Public
The Microsetta participant facing user interface

biocore/microsetta-interface’s past year of commit activity

Jinja 1 BSD-3-Clause 17 44 5 Updated Jun 17, 2025
kl-metapool Public
Jupyter notebooks to assist with sample processing

biocore/kl-metapool’s past year of commit activity

Python 9 MIT 17 57 (2 issues need help) 1 Updated Jun 16, 2025
unifrac-binaries Public

biocore/unifrac-binaries’s past year of commit activity

C++ 2 BSD-3-Clause 9 3 0 Updated May 30, 2025
biom-format Public
The Biological Observation Matrix (BIOM) Format Project

biocore/biom-format’s past year of commit activity

Python 94 94 23 6 Updated May 30, 2025
microsetta-private-api Public
A private microservice to support The Microsetta Initiative

biocore/microsetta-private-api’s past year of commit activity

Python 6 BSD-3-Clause 19 63 1 Updated May 22, 2025
microsetta-processing Public
Processing scripts for The Microsetta Initiative

biocore/microsetta-processing’s past year of commit activity

Python 0 BSD-3-Clause 1 1 1 Updated May 14, 2025
microsetta-admin Public

biocore/microsetta-admin’s past year of commit activity

Python 0 BSD-3-Clause 10 16 3 Updated May 14, 2025
unifrac Public

biocore/unifrac’s past year of commit activity

Python 41 BSD-3-Clause 17 10 0 Updated May 12, 2025
improved-octo-waddle Public
Balanced parentheses succinct data structure in Python

biocore/improved-octo-waddle’s past year of commit activity

Jupyter Notebook 7 BSD-3-Clause 8 17 1 Updated Apr 18, 2025
qurro Public
Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples

biocore/qurro’s past year of commit activity

JavaScript 34 BSD-3-Clause 10 124 (4 issues need help) 0 Updated Apr 4, 2025

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Most used topics

microbiome bioinformatics qiime visualization ordination

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