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@scverse

scverse

Foundational tools for omics data in the life sciences
README.md

scverse

Welcome to scverse®!

scverse® is a community that develops and maintains foundational tools for single-cell omics data analysis in primarily Python.

Here's how to get started:

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  1. scanpy scanpy Public

    Single-cell analysis in Python. Scales to >100M cells.

    Python 2.1k 641

  2. anndata anndata Public

    Annotated data.

    Python 629 164

  3. scvi-tools scvi-tools Public

    Deep probabilistic analysis of single-cell and spatial omics data

    Python 1.4k 393

  4. squidpy squidpy Public

    Spatial Single Cell Analysis in Python

    Python 492 96

  5. spatialdata spatialdata Public

    An open and interoperable data framework for spatial omics data

    Python 287 62

  6. scirpy scirpy Public

    A scanpy extension to analyse single-cell TCR and BCR data.

    Python 233 38

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