Neurokernel Project

MuJoCo fruit fly body model and locomotion RL tasks

The home of the Drosophila anatomy ontology

FreeClimber is a background-subtracting particle detection platform designed to quantify group climbing performance in a Drosophila negative geotaxis (climbing) assay

Transforms for navis that enable mapping between different Drosophila template brains.

The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)

Python package for analysis of FIMTrack data

Dreye: Receptor Space Manipulation

Supplemental source code for Nern et al. 2025: "Connectome-driven neural inventory of a complete visual system" (https://doi.org/10.1038/s41586-025-08746-0). The Cell type explorer repository is at https://github.com/reiserlab/male-drosophila-visual-system-connectome

Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.

The home of the Drosophila developmental ontology, an ontology of Drosophila melanogaster developmental stages.

R package flycircuit

EM/LM neuron search

[no longer supported] for a more powerful version of this that supports multiple channels and uses machine learning, look here ➡️

🔬 Assemble Drosophila melanogaster with ABySS

A multi-omics web app for Drosophila tissues

Bio-inspired spiking-neural-network framework on an autonomous robot car.

Preliminary study to figure out how many larval gonads are needed for RNA-Seq

R Package to Access the Virtual Fly Brain project API

Support Acccess to the Female Adult Nerve Cord (FANC) Dataset