Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

genomic alignment similarity search tool

Evolutionary Bioinformatics Toolkit (EBT)

Split multi fasta file into single fasta files

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

Shuffle the string sequences such that the k-mer frequency is preserved in each string

SEquence DAtaset builder

fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data

A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format

Sequence clustering and database creation using mmseqs, from local fasta files

Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.

Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!

A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only.

Program to clean DNA fasta sequences

Removes duplicate sequences in multifasta file

omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…

A small fasta CLI toolkit developed in Rust

omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.

A small collection of one-liners in a one bash script for fasta files processing.