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Catalytic activity of FAHD1 correlates with nuclear morphology and proteomic states in human osteosarcoma cells
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  • Published: 25 November 2025

Catalytic activity of FAHD1 correlates with nuclear morphology and proteomic states in human osteosarcoma cells

  • Andreas S. Pfarl1,
  • Anne Heberle2 &
  • Alexander K. H. Weiss1 

Scientific Reports , Article number:  (2025) Cite this article

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Biochemistry
  • Cancer
  • Cell biology
  • Molecular biology

Abstract

FAHD1 is a mitochondrial enzyme involved in oxaloacetate metabolism, with emerging links to cellular redox balance, Ca2+-metabolism, and structural features. Building on previous work (Heberle et al. Sci Rep 14:9231, 2024), we investigated how overexpression of human FAHD1 (hFAHD1) variants, including wild-type, the catalytically inactive hFAHD1-K123A, and the hyperactive hFAHD1-T192S, affects nuclear morphology in U2OS osteosarcoma cells. Using high-content microscopy and automated classification, we observed variant-specific shifts in nuclear shape distributions. Notably, expression of K123A was associated with a higher frequency of large, rounded nuclei and a reduction in elongated forms, while the T192S variant produced subtler changes. By aligning morphological clusters with available proteomic profiles, we identified suggestive correlations with differences in biosynthetic activity and chromatin organization. These findings indicate that altered FAHD1 activity is correlated with changes in nuclear morphology and may be associated with broader cellular organization. Our results are descriptive and hypothesis-generating, highlighting possible links between mitochondrial metabolic states and nuclear architecture that warrant further validation.

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Data availability

Data files and full statistical data evaluation are available from the corresponding author upon reasonable request.

Abbreviations

FAHD1:

Fumarylacetoacetate hydrolase domain-containing protein 1

hFAHD1:

Human fumarylacetoacetate hydrolase domain-containing protein 1

TCA cycle:

Tricarboxylic acid cycle

ROS:

Reactive oxygen species

WT:

Wild type

K123A:

FAHD1 variant with lysine at position 123 replaced by alanine

T192S:

FAHD1 variant with threonine at position 192 replaced by serine

CTRL:

Control (unmodified U2OS cells)

U2OS:

Human osteosarcoma cell line

PBS:

Phosphate-buffered saline

FCS:

Fetal calf serum

DMEM:

Dulbecco’s modified eagle medium

BIAS:

Biological image analysis software

DRAQ5:

DNA intercalating fluorescent dye

CV1000:

CellVoyager 1000 high-content screening microscope

ImageStream:

Amnis® ImageStream®X MkII imaging flow cytometer

MS/MS:

Tandem mass spectrometry

References

  1. Weiss, A. K. H. et al. Inhibitors of fumarylacetoacetate hydrolase domain containing protein 1 (FAHD1). Molecules 26, 5009 (2021).

    Google Scholar 

  2. Cappuccio, E. et al. FAHD1 and mitochondrial metabolism: A decade of pioneering discoveries. FEBS J. 292, 2973–2991 (2025).

    Google Scholar 

  3. Etemad, S. et al. Oxaloacetate decarboxylase FAHD1—a new regulator of mitochondrial function and senescence. Mech. Ageing Dev. 177, 22–29 (2019).

    Google Scholar 

  4. Weiss, A. K. H. et al. Regulation of cellular senescence by eukaryotic members of the FAH superfamily—A role in calcium homeostasis?. Mech. Ageing Dev. 190, 111284 (2020).

    Google Scholar 

  5. Weiss, A. K. H. H., Loeffler, J. R., Liedl, K. R., Gstach, H. & Jansen-Dürr, P. The fumarylacetoacetate hydrolase (FAH) superfamily of enzymes: multifunctional enzymes from microbes to mitochondria. Biochem. Soc. Trans. 46, 295–309 (2018).

    Google Scholar 

  6. Holzknecht, M. et al. The mitochondrial enzyme FAHD1 regulates complex II activity in breast cancer cells and is indispensable for basal BT-20 cells in vitro. FEBS Lett. 596, 2781–2794 (2022).

    Google Scholar 

  7. Heberle, A. et al. Mitochondrial enzyme FAHD1 reduces ROS in osteosarcoma. Sci. Rep. 14, 9231 (2024).

    Google Scholar 

  8. Wilhelmy, K., Rytchenko, Y. & Weiss, A. K. H. A hypothetical link between FAHD1 and mitochondrial resilience?. Gene Rep. https://doi.org/10.1016/j.genrep.2025.102343 (2025).

    Google Scholar 

  9. Weiss, A. K. H. et al. Structural basis for the bi-functionality of human oxaloacetate decarboxylase FAHD1. Biochem. J. 475, 3561–3576 (2018).

    Google Scholar 

  10. Mund, A. et al. Deep Visual Proteomics defines single-cell identity and heterogeneity. Nat. Biotechnol. 40, 1231–1240 (2022).

    Google Scholar 

  11. Abel, J. et al. AI powered quantification of nuclear morphology in cancers enables prediction of genome instability and prognosis. npj Precis. Oncol. 8, 134 (2024).

    Google Scholar 

  12. Agrawal, A. et al. Mechanical signatures in cancer metastasis. npj Biol. Phys. Mech. 2, 3 (2025).

    Google Scholar 

Download references

Funding

This research received no specific grant from any funding agency in the public, commercial, or not-for-profit sectors.

Author information

Authors and Affiliations

  1. Institute for Biomedical Aging Research, Faculty of Biology, Faculty of Biology, Institute for Biomedical Aging Research, Universität Innsbruck, Rennweg 10, 6020, Innsbruck, Austria

    Andreas S. Pfarl & Alexander K. H. Weiss

  2. University Clinic for Visceral, Transplantation and Thoracic Surgery, Medical University Innsbruck, Innsbruck, Austria

    Anne Heberle

Authors
  1. Andreas S. Pfarl
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  2. Anne Heberle
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  3. Alexander K. H. Weiss
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Contributions

AP: Conceptualization, Methodology, Investigation, Formal Analysis, Visualization. AH: Cell line generation, Methodology. AW: Conceptualization, Supervision, Writing, Review & Editing, Project Administration.

Corresponding author

Correspondence to Alexander K. H. Weiss.

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Competing interests

The authors declare no competing interests.

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Supplementary Information

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Supplementary Material 1.

Supplementary Material 2.

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Pfarl, A.S., Heberle, A. & Weiss, A.K.H. Catalytic activity of FAHD1 correlates with nuclear morphology and proteomic states in human osteosarcoma cells. Sci Rep (2025). https://doi.org/10.1038/s41598-025-29460-x

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  • Received: 22 August 2025

  • Accepted: 17 November 2025

  • Published: 25 November 2025

  • DOI: https://doi.org/10.1038/s41598-025-29460-x

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