1R42 | pdb_00001r42

Native Human Angiotensin Converting Enzyme-Related Carboxypeptidase (ACE2)


Experimental Data Snapshot

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp2.20 Å
  • R-Value Free:&nbsp
    0.287 (Depositor), 0.284 (DCC)&nbsp
  • R-Value Work:&nbsp
    0.235 (Depositor), 0.233 (DCC)&nbsp

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Ligand Structure Quality Assessment&nbsp


This is version 1.5 of the entry. See complete&nbsphistory.&nbsp


Literature

ACE2 X-ray structures reveal a large hinge-bending motion important for inhibitor binding and catalysis.

Towler, P.,&nbspStaker, B.,&nbspPrasad, S.G.,&nbspMenon, S.,&nbspTang, J.,&nbspParsons, T.,&nbspRyan, D.,&nbspFisher, M.,&nbspWilliams, D.,&nbspDales, N.A.,&nbspPatane, M.A.,&nbspPantoliano, M.W.

(2004) J Biological Chem&nbsp279: 17996-18007

  • DOI:&nbsphttps://doi.org/10.1074/jbc.M311191200
  • Primary Citation of Related Structures: &nbsp
    1R42, 1R4L

  • PubMed Abstract:&nbsp

    The angiotensin-converting enzyme (ACE)-related carboxypeptidase, ACE2, is a type I integral membrane protein of 805 amino acids that contains one HEXXH + E zinc-binding consensus sequence. ACE2 has been implicated in the regulation of heart function and also as a functional receptor for the coronavirus that causes the severe acute respiratory syndrome (SARS). To gain further insights into this enzyme, the first crystal structures of the native and inhibitor-bound forms of the ACE2 extracellular domains were solved to 2.2- and 3.0-A resolution, respectively. Comparison of these structures revealed a large inhibitor-dependent hinge-bending movement of one catalytic subdomain relative to the other ( approximately 16 degrees ) that brings important residues into position for catalysis. The potent inhibitor MLN-4760 ((S,S)-2-[1-carboxy-2-[3-(3,5-dichlorobenzyl)-3H-imidazol4-yl]-ethylamino]-4-methylpentanoic acid) makes key binding interactions within the active site and offers insights regarding the action of residues involved in catalysis and substrate specificity. A few active site residue substitutions in ACE2 relative to ACE appear to eliminate the S(2)' substrate-binding subsite and account for the observed reactivity change from the peptidyl dipeptidase activity of ACE to the carboxypeptidase activity of ACE2.


  • Organizational Affiliation:&nbsp

    Drug Discovery and Protein Sciences, Millennium Pharmaceuticals, Incorporated, Cambridge, Massachusetts 02139, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
angiotensin I converting enzyme 2615Homo sapiensMutation(s): 0&nbsp
Gene Names:&nbspACE2
EC:&nbsp3.4.17&nbsp(UniProt),&nbsp3.4.17.23&nbsp(UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspQ9BYF1&nbsp(Homo sapiens)
Explore&nbspQ9BYF1&nbsp
Go to UniProtKB: &nbspQ9BYF1
PHAROS: &nbspQ9BYF1
GTEx: &nbspENSG00000130234&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYF1
Glycosylation
Glycosylation Sites: 3Go to GlyGen: Q9BYF1-1
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
disordered segment of collectrin homology domain6Homo sapiensMutation(s): 0&nbsp
Gene Names:&nbspACE2
Sequence Annotations
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  • Reference Sequence

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
disordered segment of collectrin homology domain20Homo sapiensMutation(s): 0&nbsp
Gene Names:&nbspACE2
Sequence Annotations
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  • Reference Sequence

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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
disordered segment of collectrin homology domain18Homo sapiensMutation(s): 0&nbsp
Gene Names:&nbspACE2
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
disordered segment of collectrin homology domain14Homo sapiensMutation(s): 0&nbsp
Gene Names:&nbspACE2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp2.20 Å
  • R-Value Free:&nbsp 0.287 (Depositor), 0.284 (DCC)&nbsp
  • R-Value Work:&nbsp 0.235 (Depositor), 0.233 (DCC)&nbsp
Space Group:&nbspC 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 103.638α = 90
b = 89.478β = 109.15
c = 112.399γ = 90
Software Package:
Software NamePurpose
CNXrefinement
DENZOdata reduction
SCALEPACKdata scaling
MLPHAREphasing

Structure Validation

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Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-02-03
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Non-polymer description, Version format compliance
  • Version 1.3: 2018-01-24
    Changes: Database references
  • Version 1.4: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary
  • Version 1.5: 2024-10-16
    Changes: Data collection, Database references, Structure summary