2N11 | pdb_00002n11

Solution structure of human Myosin VI isoform3 (998-1071)


Experimental Data Snapshot

  • Method:&nbspSOLUTION NMR
  • Conformers Calculated:&nbsp100&nbsp
  • Conformers Submitted:&nbsp20&nbsp
  • Selection Criteria:&nbsptarget function&nbsp

wwPDB Validation&nbsp &nbsp3D Report&nbspFull Report


This is version 1.3 of the entry. See complete&nbsphistory.&nbsp


Literature

Myosin VI Contains a Compact Structural Motif that Binds to Ubiquitin Chains.

He, F.,&nbspWollscheid, H.P.,&nbspNowicka, U.,&nbspBiancospino, M.,&nbspValentini, E.,&nbspEhlinger, A.,&nbspAcconcia, F.,&nbspMagistrati, E.,&nbspPolo, S.,&nbspWalters, K.J.

(2016) Cell Rep&nbsp14: 2683-2694

  • DOI:&nbsphttps://doi.org/10.1016/j.celrep.2016.01.079
  • Primary Citation of Related Structures: &nbsp
    2N0Z, 2N10, 2N11, 2N13

  • PubMed Abstract:&nbsp

    Myosin VI is critical for cargo trafficking and sorting during early endocytosis and autophagosome maturation, and abnormalities in these processes are linked to cancers, neurodegeneration, deafness, and hypertropic cardiomyopathy. We identify a structured domain in myosin VI, myosin VI ubiquitin-binding domain (MyUb), that binds to ubiquitin chains, especially those linked via K63, K11, and K29. Herein, we solve the solution structure of MyUb and MyUb:K63-linked diubiquitin. MyUb folds as a compact helix-turn-helix-like motif and nestles between the ubiquitins of K63-linked diubiquitin, interacting with distinct surfaces of each. A nine-amino-acid extension at the C-terminal helix (Helix2) of MyUb is required for myosin VI interaction with endocytic and autophagic adaptors. Structure-guided mutations revealed that a functional MyUb is necessary for optineurin interaction. In addition, we found that an isoform-specific helix restricts MyUb binding to ubiquitin chains. This work provides fundamental insights into myosin VI interaction with ubiquitinated cargo and functional adaptors.


  • Organizational Affiliation:&nbsp

    Protein Processing Section, Structural Biophysics Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Unconventional myosin-VI74Homo sapiensMutation(s): 0&nbsp
Gene Names:&nbspMYO6,&nbspKIAA0389
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspQ9UM54&nbsp(Homo sapiens)
Explore&nbspQ9UM54&nbsp
Go to UniProtKB: &nbspQ9UM54
PHAROS: &nbspQ9UM54
GTEx: &nbspENSG00000196586&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UM54
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspSOLUTION NMR
  • Conformers Calculated:&nbsp100&nbsp
  • Conformers Submitted:&nbsp20&nbsp
  • Selection Criteria:&nbsptarget function&nbsp

Structure Validation

View&nbspFull Validation Report



Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-03-09
    Type: Initial release
  • Version 1.1: 2016-03-30
    Changes: Database references
  • Version 1.2: 2016-04-06
    Changes: Database references
  • Version 1.3: 2024-05-01
    Changes: Data collection, Database references