 Download MendeleyStructure of the T6 Human Nickel Insulin Derivative at 1.35 A Resolution.
Prugovecki, B., Dodson, E., Dodson, G., Matkovic-Calogovic, D.(2009) Croat Chem Acta 82: 433-438
3EXX | pdb_00003exx
Structure of the T6 human insulin derivative with nickel at 1.35 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3EXX/pdb
- Classification: HORMONE
- Organism(s): Homo sapiens
- Mutation(s): No 
- Deposited: 2008-10-17 Released: 2009-05-19 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.171 (Depositor), 0.170 (DCC) 
- R-Value Work: 0.124 (Depositor), 0.120 (DCC) 
- R-Value Observed: 0.126 (Depositor) 
wwPDB Validation   3D Report Full Report
This is version 1.4 of the entry. See complete history. 
Literature
Macromolecules
Find similar proteins by: Sequence | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Insulin A chain | 21 | Homo sapiens | Mutation(s): 0  |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01308 (Homo sapiens) Explore P01308  Go to UniProtKB:  P01308 | |||||
PHAROS:  P01308 GTEx:  ENSG00000254647  | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P01308 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Insulin B chain | 30 | Homo sapiens | Mutation(s): 0  |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01308 (Homo sapiens) Explore P01308  Go to UniProtKB:  P01308 | |||||
PHAROS:  P01308 GTEx:  ENSG00000254647  | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P01308 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | E [auth B], G [auth D] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
| NA Query on NA | F [auth B], H [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free:  0.171 (Depositor), 0.170 (DCC) 
- R-Value Work:  0.124 (Depositor), 0.120 (DCC) 
- R-Value Observed: 0.126 (Depositor) 
Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 81.411 | α = 90 |
| b = 81.411 | β = 90 |
| c = 33.752 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345dtb | data collection |
Entry History 
Deposition Data
- Released Date: 2009-05-19  Deposition Author(s): Prugovecki, B., Matkovic-Calogovic, D.
Revision History (Full details and data files)
- Version 1.0: 2009-05-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2011-09-07
Changes: Database references - Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations - Version 1.4: 2024-11-20
Changes: Structure summary
