3I40 | pdb_00003i40

Human insulin


Experimental Data Snapshot

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.85 Å
  • R-Value Free:&nbsp
    0.228 (Depositor), 0.230 (DCC)&nbsp
  • R-Value Work:&nbsp
    0.200 (Depositor), 0.200 (DCC)&nbsp
  • R-Value Observed:&nbsp
    0.202&nbsp(Depositor)&nbsp

Starting Model: experimental
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wwPDB Validation&nbsp &nbsp3D Report&nbspFull Report


This is version 1.4 of the entry. See complete&nbsphistory.&nbsp


Literature

X-ray investigation of gene-engineered human insulin crystallized from a solution containing polysialic acid.

Timofeev, V.I.,&nbspChuprov-Netochin, R.N.,&nbspSamigina, V.R.,&nbspBezuglov, V.V.,&nbspMiroshnikov, K.A.,&nbspKuranova, I.P.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun&nbsp66: 259-263

  • DOI:&nbsphttps://doi.org/10.1107/S1744309110000461
  • Primary Citation of Related Structures: &nbsp
    3I3Z, 3I40

  • PubMed Abstract:&nbsp

    Attempts to crystallize the noncovalent complex of recombinant human insulin with polysialic acid were carried out under normal and microgravity conditions. Both crystal types belonged to the same space group, I2(1)3, with unit-cell parameters a = b = c = 77.365 A, alpha = beta = gamma = 90.00 degrees. The reported space group and unit-cell parameters are almost identical to those of cubic insulin reported in the PDB. The results of X-ray studies confirmed that the crystals obtained were cubic insulin crystals and that they contained no polysialic acid or its fragments. Electron-density maps were calculated using X-ray diffraction sets from earth-grown and microgravity-grown crystals and the three-dimensional structure of the insulin molecule was determined and refined. The conformation and secondary-structural elements of the insulin molecule in different crystal forms were compared.


  • Organizational Affiliation:&nbsp

    Shubnikov Institute of Crystallography, Russian Academy of Sciences, Leninsky Prospekt 59, 119333 Moscow, Russia. [email protected]


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Insulin A chain21Homo sapiensMutation(s): 0&nbsp
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP01308&nbsp(Homo sapiens)
Explore&nbspP01308&nbsp
Go to UniProtKB: &nbspP01308
PHAROS: &nbspP01308
GTEx: &nbspENSG00000254647&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01308
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Insulin B chain30Homo sapiensMutation(s): 0&nbsp
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP01308&nbsp(Homo sapiens)
Explore&nbspP01308&nbsp
Go to UniProtKB: &nbspP01308
PHAROS: &nbspP01308
GTEx: &nbspENSG00000254647&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01308
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.85 Å
  • R-Value Free:&nbsp 0.228 (Depositor), 0.230 (DCC)&nbsp
  • R-Value Work:&nbsp 0.200 (Depositor), 0.200 (DCC)&nbsp
  • R-Value Observed:&nbsp0.202&nbsp(Depositor)&nbsp
Space Group:&nbspI 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.22α = 90
b = 77.22β = 90
c = 77.22γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
DENZOdata reduction

Structure Validation

View&nbspFull Validation Report



Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-01-05
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2014-04-16
    Changes: Refinement description
  • Version 1.3: 2023-11-01
    Changes: Data collection, Database references, Refinement description
  • Version 1.4: 2024-11-06
    Changes: Structure summary