4EFX | pdb_00004efx

Highly biologically active insulin with additional disulfide bond


Experimental Data Snapshot

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.98 Å
  • R-Value Free:&nbsp
    0.278 (Depositor), 0.280 (DCC)&nbsp
  • R-Value Work:&nbsp
    0.207 (Depositor), 0.210 (DCC)&nbsp
  • R-Value Observed:&nbsp
    0.210&nbsp(Depositor)&nbsp

Starting Model: other
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wwPDB Validation&nbsp &nbsp3D Report&nbspFull Report


This is version 1.2 of the entry. See complete&nbsphistory.&nbsp


Literature

Insulin analog with additional disulfide bond has increased stability and preserved activity.

Vinther, T.N.,&nbspNorrman, M.,&nbspRibel, U.,&nbspHuus, K.,&nbspSchlein, M.,&nbspSteensgaard, D.B.,&nbspPedersen, T.A.,&nbspPettersson, I.,&nbspLudvigsen, S.,&nbspKjeldsen, T.,&nbspJensen, K.J.,&nbspHubalek, F.

(2013) Protein Sci&nbsp22: 296-305

  • DOI:&nbsphttps://doi.org/10.1002/pro.2211
  • Primary Citation of Related Structures: &nbsp
    4EFX

  • PubMed Abstract:&nbsp

    Insulin is a key hormone controlling glucose homeostasis. All known vertebrate insulin analogs have a classical structure with three 100% conserved disulfide bonds that are essential for structural stability and thus the function of insulin. It might be hypothesized that an additional disulfide bond may enhance insulin structural stability which would be highly desirable in a pharmaceutical use. To address this hypothesis, we designed insulin with an additional interchain disulfide bond in positions A10/B4 based on Cα-Cα distances, solvent exposure, and side-chain orientation in human insulin (HI) structure. This insulin analog had increased affinity for the insulin receptor and apparently augmented glucodynamic potency in a normal rat model compared with HI. Addition of the disulfide bond also resulted in a 34.6°C increase in melting temperature and prevented insulin fibril formation under high physical stress even though the C-terminus of the B-chain thought to be directly involved in fibril formation was not modified. Importantly, this analog was capable of forming hexamer upon Zn addition as typical for wild-type insulin and its crystal structure showed only minor deviations from the classical insulin structure. Furthermore, the additional disulfide bond prevented this insulin analog from adopting the R-state conformation and thus showing that the R-state conformation is not a prerequisite for binding to insulin receptor as previously suggested. In summary, this is the first example of an insulin analog featuring a fourth disulfide bond with increased structural stability and retained function.


  • Organizational Affiliation:&nbsp

    Diabetes Research Unit, Novo Nordisk A/S, Novo Nordisk Park, Måløv DK-2760, Denmark.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Insulin
A, C
21Homo sapiensMutation(s): 1&nbsp
Gene Names:&nbspINS
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP01308&nbsp(Homo sapiens)
Explore&nbspP01308&nbsp
Go to UniProtKB: &nbspP01308
PHAROS: &nbspP01308
GTEx: &nbspENSG00000254647&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01308
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Insulin
B, D
28Homo sapiensMutation(s): 1&nbsp
Gene Names:&nbspINS
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP01308&nbsp(Homo sapiens)
Explore&nbspP01308&nbsp
Go to UniProtKB: &nbspP01308
PHAROS: &nbspP01308
GTEx: &nbspENSG00000254647&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01308
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.98 Å
  • R-Value Free:&nbsp 0.278 (Depositor), 0.280 (DCC)&nbsp
  • R-Value Work:&nbsp 0.207 (Depositor), 0.210 (DCC)&nbsp
  • R-Value Observed:&nbsp0.210&nbsp(Depositor)&nbsp
Space Group:&nbspH 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.367α = 90
b = 79.367β = 90
c = 34.228γ = 120
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling

Structure Validation

View&nbspFull Validation Report



Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-03-06
    Type: Initial release
  • Version 1.1: 2024-04-03
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.2: 2024-11-20
    Changes: Structure summary