 Download MendeleyInsulin co-crystallizes in the presence of it beta-cell chaperone sulfatide
Bracey, A.W., Magis, A.T., Buschard, K., Osterbye, T., Bailey, K.M., Ostrov, D.A.To be published.
4XC4 | pdb_00004xc4
Insulin co-crystallizes in the presence of it beta-cell chaperone sulfatide
- PDB DOI: https://doi.org/10.2210/pdb4XC4/pdb
- Entry: 4XC4 supersedes: 3BRR
- Classification: HORMONE
- Organism(s): Homo sapiens
- Expression System: Saccharomyces cerevisiae
- Mutation(s): No 
- Deposited: 2014-12-17 Released: 2015-02-11 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.254 (Depositor), 0.250 (DCC) 
- R-Value Work: 0.218 (Depositor), 0.220 (DCC) 
- R-Value Observed: 0.222 (Depositor) 
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
This is version 1.3 of the entry. See complete history. 
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Insulin | 21 | Homo sapiens | Mutation(s): 0  Gene Names: INS |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01308 (Homo sapiens) Explore P01308  Go to UniProtKB:  P01308 | |||||
PHAROS:  P01308 GTEx:  ENSG00000254647  | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P01308 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Insulin | 30 | Homo sapiens | Mutation(s): 0  Gene Names: INS |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01308 (Homo sapiens) Explore P01308  Go to UniProtKB:  P01308 | |||||
PHAROS:  P01308 GTEx:  ENSG00000254647  | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P01308 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | E [auth B], H [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CL Query on CL | F [auth B], I [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | G [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free:  0.254 (Depositor), 0.250 (DCC) 
- R-Value Work:  0.218 (Depositor), 0.220 (DCC) 
- R-Value Observed: 0.222 (Depositor) 
Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 81.61 | α = 90 |
| b = 81.61 | β = 90 |
| c = 33.729 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Coot | model building |
| PHENIX | phasing |
| HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2015-02-11  Deposition Author(s): Bracey, A.W., Magis, A.T., Buschard, K., Osterbye, T., Bailey, K.M., Ostrov, D.A.
- This entry supersedes: 3BRR
Revision History (Full details and data files)
- Version 1.0: 2015-02-11
Type: Initial release - Version 1.1: 2017-11-22
Changes: Advisory, Derived calculations, Refinement description, Source and taxonomy - Version 1.2: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2024-11-06
Changes: Structure summary
